Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 2
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G132000.1 | Wheat | plastid | 97.36 | 97.36 |
| TraesCS4A01G180500.1 | Wheat | plastid | 97.36 | 96.93 |
| HORVU4Hr1G024530.1 | Barley | plastid | 96.48 | 96.9 |
| Os11t0107600-01 | Rice | plastid | 76.65 | 79.09 |
| Os12t0107600-00 | Rice | plastid | 74.89 | 77.27 |
| OQU82692 | Sorghum | plastid | 72.25 | 73.21 |
| EES15518 | Sorghum | plastid | 72.25 | 70.39 |
| TraesCS5B01G150200.1 | Wheat | plastid | 69.6 | 69.91 |
| Zm00001d052322_P001 | Maize | plastid | 57.71 | 69.31 |
| GSMUA_Achr3P10010_001 | Banana | plastid | 59.03 | 62.04 |
| GSMUA_Achr5P07440_001 | Banana | plastid | 55.95 | 59.07 |
| KXG38626 | Sorghum | golgi, plasma membrane, plastid | 48.02 | 58.92 |
| TraesCS3B01G380000.1 | Wheat | plastid | 52.86 | 56.34 |
| TraesCS1B01G307400.1 | Wheat | golgi, unclear | 53.74 | 55.45 |
| CDY07736 | Canola | plastid | 52.42 | 53.6 |
| KRH76033 | Soybean | endoplasmic reticulum | 51.54 | 53.42 |
| CDY63156 | Canola | plastid | 51.1 | 53.21 |
| Bra000056.1-P | Field mustard | plastid | 51.98 | 53.15 |
| AT2G38360.1 | Thale cress | plastid | 50.66 | 52.27 |
| KRH65569 | Soybean | plastid | 51.54 | 51.54 |
| PGSC0003DMT400034320 | Potato | plastid | 47.14 | 50.47 |
| Solyc10g076360.1.1 | Tomato | plastid | 49.78 | 50.45 |
| KRG93818 | Soybean | extracellular, plasma membrane, vacuole | 18.5 | 50.0 |
| CDX80758 | Canola | plastid | 47.14 | 50.0 |
| PGSC0003DMT400041063 | Potato | plastid | 48.9 | 48.68 |
| AT5G01640.1 | Thale cress | plastid | 47.58 | 48.43 |
| AT4G00005.1 | Thale cress | extracellular, plasma membrane | 25.11 | 48.31 |
| CDY61529 | Canola | plastid | 26.43 | 47.62 |
| Bra005112.1-P | Field mustard | plastid | 34.8 | 47.02 |
| KRH00333 | Soybean | plastid | 46.26 | 46.26 |
| KRH49465 | Soybean | plastid | 44.93 | 45.74 |
| CDY54457 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 35.24 | 43.96 |
| KRH32827 | Soybean | plastid | 40.97 | 41.15 |
| TraesCS5B01G385000.1 | Wheat | extracellular, plasma membrane | 25.11 | 39.86 |
| TraesCS5B01G447900.1 | Wheat | plastid | 33.04 | 32.33 |
| TraesCS1B01G143000.1 | Wheat | plastid | 27.31 | 32.29 |
| TraesCS3B01G122600.1 | Wheat | plastid | 26.87 | 32.11 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G137300.1 | EnsemblPlantsGene:TraesCS4B01G137300 | InterPro:Prenylated_rab_accept_PRA1 | PANTHER:PTHR19317 | PANTHER:PTHR19317:SF35 | PFAM:PF03208 |
| SEG:seg | TMHMM:TMhelix | MapMan:22.8.4.3.2 | : | : | : |
Description
No Description!
Coordinates
chr4B:+:181005870..181006553
Molecular Weight (calculated)
23232.2 Da
IEP (calculated)
8.219
GRAVY (calculated)
0.621
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MASAAPPLLP TTVPAAAPAT VLPAAPDAAA TSIASPDPAA TRAFLGRIYD SAKRSLSGAR PWPELLDRAA LSRPDSLSDA TARLRKNLAY FRVNYAALLA
101: LSLAVSLLAH PFSLAALLAL LAAWCFLYLL RPADAVPLNA LGRTFSDRET LGGLIAASVF VVFLTSVGGI IFSALALGAA VVCAHGAFRV PEDLFLDEVP
201: DQGLVGNGAT LNLLSFINGA AGGGGRV
101: LSLAVSLLAH PFSLAALLAL LAAWCFLYLL RPADAVPLNA LGRTFSDRET LGGLIAASVF VVFLTSVGGI IFSALALGAA VVCAHGAFRV PEDLFLDEVP
201: DQGLVGNGAT LNLLSFINGA AGGGGRV
001: MASSAPPVLP ISNPQTVPSA APSSVESQPP IATPAFRNFI NQITETVKNG LSKRRPWAEL ADRSALSKPE SISDAAVRIR KNYSYFKVNY LTVATAIVGF
101: SLVTHPFSLV FLLCLLASWL FLYLFRPTDQ PIVLFGRTFS DRETLGCLIL FSIFVIFLTD VGSVLVSAMM IGVALICAHG AFRAPEDLFL DEQEPAATGF
201: LSFLGGAASS AAPAVIAARV
101: SLVTHPFSLV FLLCLLASWL FLYLFRPTDQ PIVLFGRTFS DRETLGCLIL FSIFVIFLTD VGSVLVSAMM IGVALICAHG AFRAPEDLFL DEQEPAATGF
201: LSFLGGAASS AAPAVIAARV
Arabidopsis Description
PRA1B4PRA1 family protein B4 [Source:UniProtKB/Swiss-Prot;Acc:O80915]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.