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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 7
  • nucleus 1
  • peroxisome 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:nucleus, peroxisome, plasma membrane, plastid
BaCelLo:plastid
EpiLoc:nucleus
iPSORT:plastid
MultiLoc:peroxisome
Plant-mPloc:plasma membrane
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0226300-01
Os01t0736900-01
Os01t0827400-01
Os01t0951800-01
Os02t0265900-01
Os03t0356484-01
Os03t0819900-01
Os05t0383000-01
Os05t0461300-01
Os05t0474400-01
Os05t0526400-01
Os06t0107000-01
Os06t0503400-01
Os07t0239400-01
Os11t0107600-01
Os12t0107600-00

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G38360.1 Os03t0819900-01 AT3G46060.1 21798944
AT2G38360.1 Os05t0461300-01 AT3G46060.1 21798944
AT2G38360.1 Os07t0239400-01 AT3G46060.1 21798944
AT5G01640.1 Os06t0107000-01 AT4G25660.1 21798944
AT5G01640.1 Os01t0827400-01 AT5G01640.1 21798944
AT5G01640.1 Os05t0474400-01 AT5G01640.1 21798944
AT5G01640.1 Os11t0107600-01 AT5G01640.1 21798944
AT5G01640.1 Os12t0107600-00 AT5G01640.1 21798944
AT5G01640.1 Os01t0951800-01 AT5G12390.1 21798944
AT5G01640.1 Os03t0356484-01 AT5G12390.1 21798944
AT5G01640.1 Os05t0383000-01 AT5G12390.1 21798944
AT5G01640.1 Os01t0226300-01 AT5G41600.1 21798944
AT5G01640.1 Os01t0736900-01 AT5G41600.1 21798944
AT5G01640.1 Os02t0265900-01 AT5G41600.1 21798944
AT5G01640.1 Os05t0526400-01 AT5G41600.1 21798944
AT5G01640.1 Os06t0503400-01 AT5G41600.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os11t0107600-01 Rice plastid 96.82 96.82
OQU82692 Sorghum plastid 79.09 77.68
TraesCS4D01G132000.1 Wheat plastid 79.09 76.65
HORVU4Hr1G024530.1 Barley plastid 78.18 76.11
TraesCS4A01G180500.1 Wheat plastid 78.64 75.88
TraesCS4B01G137300.1 Wheat plastid 77.27 74.89
EES15518 Sorghum plastid 76.82 72.53
Zm00001d052322_P001 Maize plastid 62.27 72.49
TraesCS5D01G156800.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 72.27 70.35
TraesCS5A01G151600.1 Wheat plastid 71.82 69.91
TraesCS5B01G150200.1 Wheat plastid 70.91 69.03
HORVU5Hr1G047520.1 Barley endoplasmic reticulum, plastid 69.55 63.22
Os01t0827400-01 Rice extracellular, mitochondrion, plasma membrane 40.0 60.69
KXG38626 Sorghum golgi, plasma membrane, plastid 50.0 59.46
GSMUA_Achr3P10010_001 Banana plastid 57.73 58.8
GSMUA_Achr5P07440_001 Banana plastid 55.91 57.21
Os05t0474400-01 Rice plasma membrane, vacuole 56.82 56.82
Bra000056.1-P Field mustard plastid 52.73 52.25
Solyc10g076360.1.1 Tomato plastid 53.18 52.23
AT2G38360.1 Thale cress plastid 51.82 51.82
CDY07736 Canola plastid 52.27 51.8
CDY63156 Canola plastid 50.91 51.38
CDX80758 Canola plastid 49.55 50.93
PGSC0003DMT400041063 Potato plastid 52.73 50.88
AT4G00005.1 Thale cress extracellular, plasma membrane 27.27 50.85
KRH76033 Soybean endoplasmic reticulum 50.45 50.68
PGSC0003DMT400034320 Potato plastid 48.64 50.47
KRG93818 Soybean extracellular, plasma membrane, vacuole 19.09 50.0
AT5G01640.1 Thale cress plastid 50.45 49.78
KRH65569 Soybean plastid 50.45 48.9
Bra005112.1-P Field mustard plastid 36.36 47.62
CDY61529 Canola plastid 26.82 46.83
CDY54457 Canola endoplasmic reticulum, peroxisome, plasma membrane 36.82 44.51
KRH49465 Soybean plastid 44.55 43.95
KRH00333 Soybean plastid 45.0 43.61
KRH32827 Soybean plastid 41.36 40.27
Os05t0200280-01 Rice plasma membrane 29.09 33.16
Os01t0196500-01 Rice plastid 29.55 32.34
Os03t0798400-01 Rice plasma membrane 33.18 31.74
Os03t0741600-00 Rice nucleus 34.09 22.06
Protein Annotations
EnsemblPlants:Os12t0107600-00EnsemblPlantsGene:Os12g0107600EntrezGene:4351274GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:Prenylated_rab_accept_PRA1PANTHER:PTHR19317PANTHER:PTHR19317:SF35PFAM:PF03208ProteinID:ABA95633.1ProteinID:BAF28965.1
ProteinID:BAT15516.1RefSeq:XP_015619644.1SEG:segTMHMM:TMhelixUniParc:UPI0000681BB3UniProt:Q2QYS7
MapMan:22.8.4.3.2:::::
Description
Prenylated rab acceptor PRA1 family protein. (Os12t0107600-00)
Coordinates
chr12:+:414959..415621
Molecular Weight (calculated)
22777.5 Da
IEP (calculated)
8.747
GRAVY (calculated)
0.568
Length
220 amino acids
Sequence
(BLAST)
001: MAAASPPLLP TTVLPANTTA TVSPAPTSVS SADAKPAATR AFLARLLDSV KRALSGARPW PELIDRSALS HSESLSDSGA RLRKNLAYFR VNYAAIVALS
101: LAASLLAHPF SLAALLALLA AWCFLYLLRP SDAPPLAAFG RTFSDRETLG GLIVASAFVI FLTSVGSLIF SALALGAAIV CAHGAFRIPE DLFLDEPDQA
201: NGAASVNLLS FITSATGGRV
Best Arabidopsis Sequence Match ( AT2G38360.1 )
(BLAST)
001: MASSAPPVLP ISNPQTVPSA APSSVESQPP IATPAFRNFI NQITETVKNG LSKRRPWAEL ADRSALSKPE SISDAAVRIR KNYSYFKVNY LTVATAIVGF
101: SLVTHPFSLV FLLCLLASWL FLYLFRPTDQ PIVLFGRTFS DRETLGCLIL FSIFVIFLTD VGSVLVSAMM IGVALICAHG AFRAPEDLFL DEQEPAATGF
201: LSFLGGAASS AAPAVIAARV
Arabidopsis Description
PRA1B4PRA1 family protein B4 [Source:UniProtKB/Swiss-Prot;Acc:O80915]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.