Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- plasma membrane 3
- plastid 1
- extracellular 1
- golgi 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
18260611
golgi: 25047511 plasma membrane: 27800704 plastid: 27992503 |
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d012776_P001 | Maize | extracellular | 88.54 | 88.54 |
| Zm00001d043551_P003 | Maize | plasma membrane | 89.33 | 87.94 |
| KXG33320 | Sorghum | cytosol, nucleus, plasma membrane | 87.75 | 86.05 |
| HORVU3Hr1G069970.2 | Barley | cytosol, nucleus, plasma membrane | 84.98 | 84.31 |
| TraesCS3D01G279100.1 | Wheat | cytosol, nucleus, plasma membrane | 81.42 | 83.06 |
| TraesCS3B01G313000.1 | Wheat | cytosol, nucleus, plasma membrane | 83.0 | 83.0 |
| TraesCS3A01G278800.1 | Wheat | golgi | 81.03 | 82.66 |
| Os05t0526400-01 | Rice | plasma membrane | 81.03 | 81.67 |
| Os01t0226300-01 | Rice | plasma membrane | 51.78 | 73.6 |
| VIT_02s0025g00640.t01 | Wine grape | cytosol, nucleus, plasma membrane | 67.59 | 67.86 |
| VIT_15s0046g01760.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 67.98 | 67.45 |
| KRH41254 | Soybean | cytosol, nucleus, plasma membrane | 66.8 | 66.54 |
| CDY08353 | Canola | cytosol, endoplasmic reticulum, nucleus | 65.61 | 66.4 |
| Solyc03g007740.2.1 | Tomato | nucleus | 66.8 | 66.27 |
| KRH59988 | Soybean | mitochondrion | 66.4 | 66.14 |
| CDY25557 | Canola | cytosol, endoplasmic reticulum, nucleus | 65.22 | 65.74 |
| KRG99174 | Soybean | endoplasmic reticulum, plasma membrane | 22.53 | 65.52 |
| PGSC0003DMT400051387 | Potato | cytosol, nucleus, plasma membrane | 66.01 | 65.49 |
| CDY34396 | Canola | cytosol, endoplasmic reticulum, nucleus | 64.03 | 64.54 |
| PGSC0003DMT400074360 | Potato | cytosol, nucleus, plasma membrane | 64.43 | 64.43 |
| CDY38194 | Canola | cytosol, nucleus, plasma membrane | 63.64 | 64.4 |
| KRH40357 | Soybean | endoplasmic reticulum | 65.22 | 64.2 |
| Bra027678.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus | 63.64 | 64.14 |
| KRH06560 | Soybean | endoplasmic reticulum | 64.43 | 63.67 |
| Bra027757.1-P | Field mustard | cytosol, endoplasmic reticulum, peroxisome | 62.85 | 63.6 |
| KRH00872 | Soybean | endoplasmic reticulum | 64.82 | 63.32 |
| Solyc06g036430.2.1 | Tomato | cytosol, nucleus, plasma membrane | 63.24 | 63.24 |
| PGSC0003DMT400049928 | Potato | cytosol, nucleus, plasma membrane | 63.64 | 63.14 |
| AT5G41600.1 | Thale cress | cytosol, nucleus, plasma membrane | 64.03 | 63.03 |
| PGSC0003DMT400032086 | Potato | cytosol, nucleus, plasma membrane | 67.19 | 62.96 |
| PGSC0003DMT400000230 | Potato | cytosol, nucleus, plasma membrane | 65.61 | 62.64 |
| Solyc10g011870.2.1 | Tomato | cytosol, nucleus, plasma membrane | 64.82 | 62.36 |
| Solyc01g095200.2.1 | Tomato | plastid | 64.82 | 62.36 |
| Solyc08g081730.2.1 | Tomato | endoplasmic reticulum, plastid | 66.4 | 62.22 |
| AT1G64090.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 66.01 | 61.62 |
| Bra004562.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 60.47 | 60.96 |
| CDX79993 | Canola | cytosol, peroxisome, plasma membrane | 60.47 | 60.96 |
| CDY10954 | Canola | cytosol | 64.43 | 60.37 |
| CDY52012 | Canola | cytosol, peroxisome, plasma membrane | 60.47 | 60.24 |
| CDY42012 | Canola | cytosol, peroxisome, plasma membrane | 59.68 | 60.16 |
| Bra019285.1-P | Field mustard | cytosol | 63.64 | 60.07 |
| AT4G23630.2 | Thale cress | nucleus | 65.22 | 60.0 |
| Bra000739.1-P | Field mustard | cytosol | 62.85 | 59.55 |
| CDY53913 | Canola | cytosol, peroxisome, plasma membrane | 59.68 | 59.45 |
| Bra003455.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 59.68 | 59.45 |
| CDX90792 | Canola | cytosol, peroxisome, plasma membrane | 62.45 | 59.18 |
| CDY24806 | Canola | cytosol | 64.03 | 59.12 |
| CDY44123 | Canola | cytosol, nucleus, plasma membrane | 64.43 | 59.06 |
| CDY41666 | Canola | cytosol | 64.43 | 59.06 |
| AT2G46170.1 | Thale cress | cytosol, nucleus, plasma membrane | 59.29 | 58.82 |
| Bra013717.1-P | Field mustard | nucleus | 64.03 | 58.7 |
| CDY57657 | Canola | cytosol, nucleus, plasma membrane | 63.64 | 58.55 |
| Bra010539.1-P | Field mustard | cytosol | 62.06 | 58.36 |
| AT4G11220.1 | Thale cress | nucleus | 62.45 | 58.3 |
| VIT_16s0050g01790.t01 | Wine grape | cytosol, nucleus, plasma membrane | 58.1 | 57.87 |
| AT3G61560.1 | Thale cress | cytosol, nucleus, plasma membrane | 57.71 | 57.71 |
| KRH35223 | Soybean | cytosol, nucleus, plasma membrane | 56.92 | 57.6 |
| Os02t0265900-01 | Rice | cytosol, peroxisome, plasma membrane | 49.8 | 54.78 |
| KRH48008 | Soybean | cytosol, peroxisome, plasma membrane | 66.8 | 53.82 |
| Os05t0312500-01 | Rice | plasma membrane | 52.96 | 53.39 |
| CDY13240 | Canola | cytosol, peroxisome, plasma membrane | 33.6 | 52.8 |
| VIT_02s0025g00590.t01 | Wine grape | mitochondrion | 12.25 | 51.67 |
| CDY62522 | Canola | cytosol | 16.21 | 51.25 |
| CDY05135 | Canola | mitochondrion | 60.47 | 48.88 |
| AT4G01230.2 | Thale cress | cytosol | 45.85 | 47.54 |
| Os06t0503400-01 | Rice | plasma membrane | 49.01 | 46.79 |
| CDY07184 | Canola | cytosol, peroxisome, plasma membrane | 44.27 | 46.09 |
| CDY48510 | Canola | cytosol | 44.27 | 46.09 |
| Bra037369.1-P | Field mustard | cytosol | 44.27 | 46.09 |
| Os03t0781700-01 | Rice | cytosol, peroxisome, plasma membrane | 44.27 | 45.34 |
| KRG91601 | Soybean | mitochondrion | 55.34 | 41.18 |
| Os07t0142000-01 | Rice | plasma membrane | 39.53 | 40.65 |
| Os01t0691400-00 | Rice | cytosol, peroxisome | 35.57 | 38.96 |
| Bra035242.1-P | Field mustard | cytosol | 30.43 | 38.5 |
| Os01t0139000-00 | Rice | plasma membrane | 31.62 | 37.56 |
| CDX86802 | Canola | cytosol, nucleus, peroxisome | 35.18 | 36.33 |
| Os04t0670000-01 | Rice | plasma membrane | 28.46 | 36.18 |
| VIT_07s0031g02730.t01 | Wine grape | golgi, mitochondrion, nucleus, plasma membrane | 25.3 | 35.56 |
| Os01t0851300-01 | Rice | golgi, plasma membrane, vacuole | 25.69 | 32.02 |
| Os04t0367400-02 | Rice | plasma membrane | 26.88 | 31.92 |
| CDX89122 | Canola | extracellular, mitochondrion | 18.18 | 30.07 |
| Os03t0336600-02 | Rice | plasma membrane | 26.88 | 29.44 |
Protein Annotations
| MapMan:13.7.2.1 | EntrezGene:4327874 | EMBL:AK065226 | EMBL:AK121245 | ProteinID:BAB89453.1 | ProteinID:BAF06091.1 |
| ProteinID:BAS74232.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 |
| GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR003388 | EnsemblPlantsGene:Os01g0736900 | EnsemblPlants:Os01t0736900-01 |
| PFAM:PF02453 | PFscan:PS50845 | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF99 | UniProt:Q8S2K0 | InterPro:Reticulon |
| TMHMM:TMhelix | UniParc:UPI00000A7CD1 | RefSeq:XP_015621341.1 | SEG:seg | : | : |
Description
Reticulon family protein. (Os01t0736900-01);Similar to seed maturation protein. (Os01t0736900-02)
Coordinates
chr1:+:30738700..30740720
Molecular Weight (calculated)
28285.5 Da
IEP (calculated)
8.575
GRAVY (calculated)
0.019
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEHKEEQSV MEKLSEKLHG DSSSSSSDSD DDKKGSSSSS AAAAMKAKIY RLFGRERPVH SVLGGGKPAD LVLWRNKKIS GGVLAGATAI WLLFEIMEYH
101: LLTLVCHCLI LSLAVLFLWS NASTFIHKSP PNIPEVKIPE DLTVNIALSL RYEINRGFAT LREIGHGRDL KKFLIVIAGL WILSVLGSSC NFLTLFYIVF
201: VALYTVPVLY EKYEDKVDAF GEKAEIEFKK YYALFEEKCL SKIPKGPLKD KKH
101: LLTLVCHCLI LSLAVLFLWS NASTFIHKSP PNIPEVKIPE DLTVNIALSL RYEINRGFAT LREIGHGRDL KKFLIVIAGL WILSVLGSSC NFLTLFYIVF
201: VALYTVPVLY EKYEDKVDAF GEKAEIEFKK YYALFEEKCL SKIPKGPLKD KKH
001: MAEEHKHDES VIAPEPAVEV VERESLMDKI SEKIHHGGDS SSSSSSSDDE DEKKKTKKPS SPSSSMKSKV YRLFGREQPV HKVLGGGKPA DIFMWKNKKM
101: SGGVLGGATA AWVVFELMEY HLLTLLCHVM IVVLAVLFLW SNATMFINKS PPKIPEVHIP EEPILQLASG LRIEINRGFS SLREIASGRD LKKFLIAIAG
201: LWVLSILGGC FNFLTLAYIA LVLLFTVPLA YDKYEDKVDP LGEKAMIELK KQYAVLDEKV LSKIPLGPLK NKKKD
101: SGGVLGGATA AWVVFELMEY HLLTLLCHVM IVVLAVLFLW SNATMFINKS PPKIPEVHIP EEPILQLASG LRIEINRGFS SLREIASGRD LKKFLIAIAG
201: LWVLSILGGC FNFLTLAYIA LVLLFTVPLA YDKYEDKVDP LGEKAMIELK KQYAVLDEKV LSKIPLGPLK NKKKD
Arabidopsis Description
RTNLB1Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178V247]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.