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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol, plasma membrane, peroxisome

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • extracellular 1
  • golgi 1
  • plasma membrane 2
  • endoplasmic reticulum 1
  • vacuole 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plasma membrane
Any Predictor:cytosol, nucleus, peroxisome
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra004562.1-P Field mustard cytosol, peroxisome, plasma membrane 99.2 99.2
CDX79993 Canola cytosol, peroxisome, plasma membrane 99.2 99.2
AT2G46170.1 Thale cress cytosol, nucleus, plasma membrane 89.24 87.84
CDY52012 Canola cytosol, peroxisome, plasma membrane 83.67 82.68
CDY53913 Canola cytosol, peroxisome, plasma membrane 82.47 81.5
KRH40357 Soybean endoplasmic reticulum 67.33 65.76
KRH00872 Soybean endoplasmic reticulum 66.53 64.48
KRG99174 Soybean endoplasmic reticulum, plasma membrane 22.31 64.37
KRH06560 Soybean endoplasmic reticulum 65.34 64.06
CDY34396 Canola cytosol, endoplasmic reticulum, nucleus 63.74 63.74
CDY08353 Canola cytosol, endoplasmic reticulum, nucleus 63.35 63.6
CDY38194 Canola cytosol, nucleus, plasma membrane 63.35 63.6
CDY25557 Canola cytosol, endoplasmic reticulum, nucleus 63.35 63.35
GSMUA_Achr8P27830_001 Banana cytosol, peroxisome, plasma membrane 62.95 62.95
GSMUA_AchrUn_... Banana cytosol, nucleus, plasma membrane 64.54 62.79
PGSC0003DMT400049928 Potato cytosol, nucleus, plasma membrane 63.74 62.75
Solyc10g011870.2.1 Tomato cytosol, nucleus, plasma membrane 64.94 61.98
GSMUA_Achr9P05440_001 Banana nucleus, peroxisome, plasma membrane 60.56 60.56
Os05t0526400-01 Rice plasma membrane 60.56 60.56
TraesCS3D01G279100.1 Wheat cytosol, nucleus, plasma membrane 59.76 60.48
Solyc01g095200.2.1 Tomato plastid 63.35 60.46
EES19841 Sorghum cytosol, nucleus, plasma membrane 61.35 60.39
CDY57657 Canola cytosol, nucleus, plasma membrane 66.14 60.36
TraesCS1D01G349700.1 Wheat cytosol, nucleus, plasma membrane 59.36 60.08
TraesCS3A01G278800.1 Wheat golgi 59.36 60.08
PGSC0003DMT400000230 Potato cytosol, nucleus, plasma membrane 63.35 60.0
Zm00001d043551_P003 Maize plasma membrane 61.35 59.92
CDY24806 Canola cytosol 65.34 59.85
TraesCS1B01G360800.1 Wheat cytosol, nucleus, plasma membrane 59.36 59.84
KXG33320 Sorghum cytosol, nucleus, plasma membrane 61.35 59.69
Os01t0736900-01 Rice plasma membrane 60.16 59.68
CDX90792 Canola cytosol, peroxisome, plasma membrane 63.35 59.55
GSMUA_Achr6P31860_001 Banana cytosol, nucleus, plasma membrane 59.76 59.52
TraesCS3B01G313000.1 Wheat cytosol, nucleus, plasma membrane 59.76 59.29
CDY44123 Canola cytosol, nucleus, plasma membrane 64.94 59.06
GSMUA_Achr3P31920_001 Banana cytosol 51.39 58.9
Zm00001d012776_P001 Maize extracellular 59.36 58.89
CDY10954 Canola cytosol 63.35 58.89
Zm00001d038768_P001 Maize extracellular, mitochondrion 59.36 58.66
HORVU3Hr1G069970.2 Barley cytosol, nucleus, plasma membrane 59.36 58.43
CDY41666 Canola cytosol 64.14 58.33
GSMUA_Achr10P... Banana cytosol, endoplasmic reticulum, plasma membrane 57.77 57.54
GSMUA_Achr4P08400_001 Banana cytosol 57.77 57.31
Os01t0226300-01 Rice plasma membrane 40.64 57.3
GSMUA_Achr5P06850_001 Banana cytosol, nucleus, plasma membrane 53.78 54.0
KRH48008 Soybean cytosol, peroxisome, plasma membrane 66.14 52.87
Zm00001d016041_P001 Maize extracellular 48.21 52.61
Zm00001d020229_P001 Maize plasma membrane 31.47 51.97
VIT_02s0025g00590.t01 Wine grape mitochondrion 12.35 51.67
Zm00001d008982_P001 Maize cytosol, nucleus, plasma membrane 57.37 51.61
Zm00001d020729_P001 Maize plasma membrane 19.52 51.58
Os02t0265900-01 Rice cytosol, peroxisome, plasma membrane 47.01 51.3
TraesCS1A01G346800.3 Wheat plasma membrane 51.39 51.19
OQU84758 Sorghum cytosol, peroxisome, plasma membrane 47.01 50.86
CDY07184 Canola cytosol, peroxisome, plasma membrane 49.0 50.62
CDY48510 Canola cytosol 49.0 50.62
KXG31516 Sorghum cytosol, nucleus, plasma membrane 56.97 50.35
CDY05135 Canola mitochondrion 62.55 50.16
TraesCS3B01G178100.1 Wheat cytosol, nucleus, plasma membrane 56.97 50.0
TraesCS3D01G159100.1 Wheat cytosol, nucleus, plasma membrane 56.97 50.0
CDY13240 Canola cytosol, peroxisome, plasma membrane 31.47 49.07
HORVU1Hr1G082010.3 Barley cytosol, nucleus, plasma membrane, plastid 50.2 48.28
CDY62522 Canola cytosol 15.14 47.5
Zm00001d039316_P001 Maize cytosol, nucleus, plasma membrane 57.77 47.39
TraesCS7D01G337800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 48.61 46.92
TraesCS7A01G341800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 47.81 46.15
TraesCS7B01G241100.1 Wheat cytosol, peroxisome, plasma membrane, plastid 47.81 46.15
Os06t0503400-01 Rice plasma membrane 48.21 45.66
EER89811 Sorghum peroxisome 46.22 45.31
Zm00001d037453_P001 Maize cytosol, peroxisome, plasma membrane 47.01 45.21
HORVU3Hr1G030760.2 Barley mitochondrion 56.18 44.9
TraesCS3A01G151200.1 Wheat cytosol, peroxisome, plasma membrane 56.97 44.41
GSMUA_Achr3P15760_001 Banana cytosol 25.9 43.33
HORVU7Hr1G081290.4 Barley plastid 37.85 41.13
CDY00916 Canola plasma membrane 38.65 40.59
CDY08616 Canola plasma membrane 38.65 40.59
HORVU7Hr1G075700.2 Barley mitochondrion 47.81 40.0
CDX89122 Canola extracellular, mitochondrion 23.51 38.56
CDY67571 Canola plasma membrane 33.07 37.05
CDX86802 Canola cytosol, nucleus, peroxisome 35.86 36.73
CDY66516 Canola endoplasmic reticulum, extracellular 26.69 36.02
CDX75962 Canola plasma membrane 31.87 35.71
CDY51936 Canola endoplasmic reticulum, peroxisome, plasma membrane 31.87 35.71
CDY46172 Canola plastid 27.89 34.65
CDX99221 Canola plasma membrane 27.89 34.48
CDX81500 Canola plasma membrane 28.29 34.13
CDX96038 Canola plasma membrane 28.69 34.12
CDX67589 Canola golgi, plasma membrane, vacuole 27.09 33.5
CDX82294 Canola plastid 25.9 33.16
CDY22970 Canola plasma membrane 25.9 33.16
CDY01898 Canola plasma membrane 27.89 33.02
CDY22971 Canola plasma membrane 25.5 32.65
CDY51584 Canola plasma membrane 26.29 32.51
CDX78209 Canola golgi, plasma membrane, vacuole 26.29 32.2
CDX73507 Canola cytosol, golgi, plasma membrane 25.9 31.71
CDY00975 Canola cytosol, endoplasmic reticulum, peroxisome 29.48 30.96
CDY36282 Canola plasma membrane 27.09 30.49
CDY08567 Canola cytosol 28.69 29.88
CDY48222 Canola cytosol, endoplasmic reticulum, plasma membrane 22.71 28.08
CDX71213 Canola plasma membrane 22.31 27.59
CDY56712 Canola mitochondrion 38.25 27.04
CDX82165 Canola endoplasmic reticulum, peroxisome, plasma membrane, plastid 26.29 26.61
CDY46067 Canola plasma membrane 21.12 25.48
CDX76854 Canola plasma membrane 20.72 25.12
CDY12701 Canola plasma membrane 28.69 23.84
Protein Annotations
MapMan:13.7.2.1GO:A0A078HW47UniProt:A0A078HW47EnsemblPlants:CDY42012ProteinID:CDY42012ProteinID:CDY42012.1
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0005789
GO:GO:0016020GO:GO:0016021EnsemblPlantsGene:GSBRNA2T00074023001InterPro:IPR003388PFAM:PF02453PFscan:PS50845
PANTHER:PTHR10994PANTHER:PTHR10994:SF95InterPro:ReticulonTMHMM:TMhelixUniParc:UPI0004EDC47ESEG:seg
Description
BnaC04g00900DReticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078HW47]
Coordinates
chrLK032512:+:51573..52883
Molecular Weight (calculated)
28397.0 Da
IEP (calculated)
7.758
GRAVY (calculated)
0.159
Length
251 amino acids
Sequence
(BLAST)
001: MAEEIEKSMP AEQSLMDKIS EKIHHHDSSS DSEYEKPDSP SAVKAKIYRL FGREKPVHKV LGGGKPADVF LWRDKKLSAA VLGVATAIWV LFELVEYHLL
101: SLLCHVSILA LGGLFLWSNA HTFIKKSPPQ IPEIHVPEEP FLLIASSLRN ELNQGFVILR SIALGRDLKK FLMIVVGLWI ISVVGNWCNF LTLVYICFVL
201: LHTVPMMYEK HEDKVDPFAE KAFKELHKHY LVFDEKVVSK IPIASLKANL G
Best Arabidopsis Sequence Match ( AT2G46170.1 )
(BLAST)
001: MAEEIEKSVP TEESLMEKIS EKIHHHDSSS SSESEYEKPD SPSAVKAKIY RMFGREKPVH KVLGGGKPAD VFLWRDKKLS GAVLGVATAI WVLFELVEYH
101: LLSLLCHISI LALGGLFLWS NAHTLINKTS PQIPEIHVPE EAFLVVASSL RNELNQAFVI LRSIALGRDL KKFLMVVVGL WIISVVGNWF NFLTLVYICF
201: VILHTVPMLY EKHEDKVDPL AEKAMKELQK QYVVFDEKVL SKIPIASLKA KAKLG
Arabidopsis Description
RTNLB5Reticulon-like protein B5 [Source:UniProtKB/Swiss-Prot;Acc:O82352]
SUBAcon: [cytosol,nucleus,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.