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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:
  • cytosol 1
  • mitochondrion 1
  • plasma membrane 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d004543_P001
Zm00001d007067_P003
Zm00001d008982_P001
Zm00001d010538_P005
Zm00001d010824_P001
Zm00001d012017_P002
Zm00001d012393_P004
Zm00001d012776_P001
Zm00001d013600_P001
Zm00001d013839_P001
Zm00001d015005_P002
Zm00001d015006_P004
Zm00001d016041_P001
Zm00001d020229_P001
Zm00001d020624_P002
Zm00001d020729_P001
Zm00001d024925_P001
Zm00001d024933_P003
Zm00001d029226_P001
Zm00001d032442_P002
Zm00001d034638_P001
Zm00001d037453_P001
Zm00001d037747_P001
Zm00001d038380_P001
Zm00001d038768_P001
Zm00001d039182_P001
Zm00001d039316_P001
Zm00001d039455_P002
Zm00001d040209_P001
Zm00001d040435_P003
Zm00001d040734_P001
Zm00001d041267_P001
Zm00001d042329_P001
Zm00001d043551_P003
Zm00001d044089_P002
Zm00001d044412_P001
Zm00001d047446_P002
Zm00001d053686_P001
Zm00001d054017_P003

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G11220.1 Zm00001d010824_P001 AT1G09330.1 21798944
AT4G11220.1 Zm00001d040734_P001 AT1G09330.1 21798944
AT4G11220.1 Zm00001d012393_P004 AT3G59500.1 21798944
AT4G11220.1 Zm00001d041267_P001 AT3G59500.1 21798944
AT4G11220.1 Zm00001d053686_P001 AT3G59500.1 21798944
AT5G41600.1 Zm00001d037747_P001 AT1G55190.1 21798944
AT5G41600.1 Zm00001d039455_P002 AT1G55190.1 21798944
AT5G41600.1 Zm00001d040435_P003 AT1G77350.1 21798944
AT5G41600.1 Zm00001d015005_P002 AT2G03120.1 21798944
AT5G41600.1 Zm00001d015006_P004 AT2G03120.1 21798944
AT5G41600.1 Zm00001d054017_P003 AT2G03120.1 21798944
AT5G41600.1 Zm00001d013600_P001 AT2G39960.1 21798944
AT5G41600.1 Zm00001d020624_P002 AT2G39960.1 21798944
AT5G41600.1 Zm00001d024925_P001 AT2G46890.1 21798944
AT5G41600.1 Zm00001d039182_P001 AT3G02420.1 21798944
AT5G41600.1 Zm00001d044089_P002 AT3G02420.1 21798944
AT5G41600.1 Zm00001d044412_P001 AT3G02420.1 21798944
AT5G41600.1 Zm00001d004543_P001 AT3G07950.1 21798944
AT5G41600.1 Zm00001d007067_P003 AT3G07950.1 21798944
AT5G41600.1 Zm00001d024933_P003 AT3G07950.1 21798944
AT5G41600.1 Zm00001d029226_P001 AT3G07950.1 21798944
AT5G41600.1 Zm00001d047446_P002 AT3G07950.1 21798944
AT5G41600.1 Zm00001d012017_P002 AT3G27080.1 21798944
AT5G41600.1 Zm00001d040209_P001 AT3G27080.1 21798944
AT5G41600.1 Zm00001d042329_P001 AT3G27080.1 21798944
AT5G41600.1 Zm00001d010538_P005 AT3G46060.1 21798944
AT5G41600.1 Zm00001d034638_P001 AT3G46060.1 21798944
AT5G41600.1 Zm00001d038380_P001 AT3G46060.1 21798944
AT5G41600.1 Zm00001d012393_P004 AT3G59500.1 21798944
AT5G41600.1 Zm00001d041267_P001 AT3G59500.1 21798944
AT5G41600.1 Zm00001d053686_P001 AT3G59500.1 21798944
AT5G41600.1 Zm00001d008982_P001 AT5G41600.1 21798944
AT5G41600.1 Zm00001d012776_P001 AT5G41600.1 21798944
AT5G41600.1 Zm00001d016041_P001 AT5G41600.1 21798944
AT5G41600.1 Zm00001d020229_P001 AT5G41600.1 21798944
AT5G41600.1 Zm00001d020729_P001 AT5G41600.1 21798944
AT5G41600.1 Zm00001d037453_P001 AT5G41600.1 21798944
AT5G41600.1 Zm00001d038768_P001 AT5G41600.1 21798944
AT5G41600.1 Zm00001d039316_P001 AT5G41600.1 21798944
AT5G41600.1 Zm00001d043551_P003 AT5G41600.1 21798944
AT5G41600.1 Zm00001d013839_P001 AT5G53560.1 21798944
AT5G41600.1 Zm00001d032442_P002 AT5G53560.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KXG31516 Sorghum cytosol, nucleus, plasma membrane 87.58 94.37
Zm00001d008982_P001 Maize cytosol, nucleus, plasma membrane 84.64 92.83
Os01t0226300-01 Rice plasma membrane 53.92 92.7
TraesCS3D01G159100.1 Wheat cytosol, nucleus, plasma membrane 74.18 79.37
TraesCS3B01G178100.1 Wheat cytosol, nucleus, plasma membrane 73.53 78.67
HORVU3Hr1G030760.2 Barley mitochondrion 74.18 72.29
TraesCS3A01G151200.1 Wheat cytosol, peroxisome, plasma membrane 73.86 70.19
VIT_15s0046g01760.t01 Wine grape cytosol, peroxisome, plasma membrane 56.54 67.84
KRH59988 Soybean mitochondrion 56.21 67.72
KRH41254 Soybean cytosol, nucleus, plasma membrane 56.21 67.72
Zm00001d043551_P003 Maize plasma membrane 56.86 67.7
Zm00001d012776_P001 Maize extracellular 55.23 66.8
VIT_02s0025g00640.t01 Wine grape cytosol, nucleus, plasma membrane 54.58 66.27
Zm00001d038768_P001 Maize extracellular, mitochondrion 54.9 66.14
PGSC0003DMT400049928 Potato cytosol, nucleus, plasma membrane 54.25 65.1
Solyc01g095200.2.1 Tomato plastid 54.9 63.88
PGSC0003DMT400000230 Potato cytosol, nucleus, plasma membrane 55.23 63.77
CDY25557 Canola cytosol, endoplasmic reticulum, nucleus 52.29 63.74
CDY08353 Canola cytosol, endoplasmic reticulum, nucleus 51.96 63.6
PGSC0003DMT400051387 Potato cytosol, nucleus, plasma membrane 52.94 63.53
Solyc03g007740.2.1 Tomato nucleus 52.94 63.53
CDY34396 Canola cytosol, endoplasmic reticulum, nucleus 51.96 63.35
CDY38194 Canola cytosol, nucleus, plasma membrane 51.63 63.2
Zm00001d020729_P001 Maize plasma membrane 19.61 63.16
Solyc10g011870.2.1 Tomato cytosol, nucleus, plasma membrane 54.25 63.12
KRH40357 Soybean endoplasmic reticulum 52.94 63.03
Bra027678.1-P Field mustard cytosol, endoplasmic reticulum, nucleus 51.31 62.55
PGSC0003DMT400074360 Potato cytosol, nucleus, plasma membrane 51.63 62.45
Bra027757.1-P Field mustard cytosol, endoplasmic reticulum, peroxisome 50.98 62.4
KRH00872 Soybean endoplasmic reticulum 52.61 62.16
PGSC0003DMT400032086 Potato cytosol, nucleus, plasma membrane 54.58 61.85
KRH06560 Soybean endoplasmic reticulum 51.63 61.72
Solyc06g036430.2.1 Tomato cytosol, nucleus, plasma membrane 50.65 61.26
Solyc08g081730.2.1 Tomato endoplasmic reticulum, plastid 53.92 61.11
CDY52012 Canola cytosol, peroxisome, plasma membrane 50.33 60.63
AT3G61560.1 Thale cress cytosol, nucleus, plasma membrane 50.0 60.47
Bra003455.1-P Field mustard cytosol, peroxisome, plasma membrane 49.67 59.84
CDY53913 Canola cytosol, peroxisome, plasma membrane 49.67 59.84
AT1G64090.2 Thale cress cytosol, endoplasmic reticulum, nucleus 52.61 59.41
AT5G41600.1 Thale cress cytosol, nucleus, plasma membrane 49.67 59.14
CDX79993 Canola cytosol, peroxisome, plasma membrane 48.04 58.57
Bra004562.1-P Field mustard cytosol, peroxisome, plasma membrane 48.04 58.57
Zm00001d020229_P001 Maize plasma membrane 28.76 57.89
CDY42012 Canola cytosol, peroxisome, plasma membrane 47.39 57.77
AT2G46170.1 Thale cress cytosol, nucleus, plasma membrane 48.04 57.65
KRG99174 Soybean endoplasmic reticulum, plasma membrane 16.34 57.47
CDX90792 Canola cytosol, peroxisome, plasma membrane 49.67 56.93
Bra000739.1-P Field mustard cytosol 49.35 56.55
CDY24806 Canola cytosol 50.33 56.2
AT4G23630.2 Thale cress nucleus 50.33 56.0
Bra019285.1-P Field mustard cytosol 49.02 55.97
CDY10954 Canola cytosol 49.35 55.93
VIT_16s0050g01790.t01 Wine grape cytosol, nucleus, plasma membrane 46.41 55.91
Bra010539.1-P Field mustard cytosol 49.02 55.76
AT4G11220.1 Thale cress nucleus 49.35 55.72
CDY41666 Canola cytosol 50.0 55.43
KRH35223 Soybean cytosol, nucleus, plasma membrane 45.1 55.2
CDY57657 Canola cytosol, nucleus, plasma membrane 49.35 54.91
Zm00001d016041_P001 Maize extracellular 41.18 54.78
Bra013717.1-P Field mustard nucleus 49.35 54.71
CDY44123 Canola cytosol, nucleus, plasma membrane 49.35 54.71
VIT_02s0025g00590.t01 Wine grape mitochondrion 10.46 53.33
KRH48008 Soybean cytosol, peroxisome, plasma membrane 54.25 52.87
CDY13240 Canola cytosol, peroxisome, plasma membrane 27.45 52.17
Zm00001d037848_P008 Maize endoplasmic reticulum, nucleus, peroxisome 42.81 51.98
Zm00001d037453_P001 Maize cytosol, peroxisome, plasma membrane 42.16 49.43
AT4G01230.2 Thale cress cytosol 37.58 47.13
CDY07184 Canola cytosol, peroxisome, plasma membrane 36.93 46.5
CDY48510 Canola cytosol 36.93 46.5
Bra037369.1-P Field mustard cytosol 36.93 46.5
CDY05135 Canola mitochondrion 47.39 46.33
Zm00001d034313_P001 Maize cytosol, nucleus, plasma membrane 34.97 43.15
CDY62522 Canola cytosol 11.11 42.5
Zm00001d038910_P001 Maize plasma membrane 30.07 40.53
KRG91601 Soybean mitochondrion 44.44 40.0
Zm00001d011631_P001 Maize golgi, peroxisome, plasma membrane 28.76 39.82
Zm00001d018781_P001 Maize extracellular, mitochondrion 31.05 39.09
Zm00001d008590_P001 Maize plastid 16.67 38.35
Bra035242.1-P Field mustard cytosol 24.18 37.0
CDX86802 Canola cytosol, nucleus, peroxisome 29.09 36.33
Zm00001d026575_P001 Maize mitochondrion, peroxisome, plasma membrane, plastid, vacuole 21.57 33.33
Zm00001d001901_P002 Maize plasma membrane 21.57 33.33
Zm00001d042846_P001 Maize plasma membrane 22.88 33.33
Zm00001d047517_P001 Maize peroxisome 24.51 32.89
CDX89122 Canola extracellular, mitochondrion 15.36 30.72
VIT_07s0031g02730.t01 Wine grape golgi, mitochondrion, nucleus, plasma membrane 17.97 30.56
Zm00001d039213_P001 Maize golgi, plasma membrane, plastid 18.3 23.93
Protein Annotations
EntrezGene:100284105MapMan:13.7.2.1UniProt:A0A1D6MF82GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005783GO:GO:0005789GO:GO:0016020GO:GO:0016021InterPro:IPR003388
ProteinID:ONM28291.1PFAM:PF02453PFscan:PS50845PANTHER:PTHR10994PANTHER:PTHR10994:SF125InterPro:Reticulon
TMHMM:TMhelixUniParc:UPI0008430D47EnsemblPlantsGene:Zm00001d039316EnsemblPlants:Zm00001d039316_P001EnsemblPlants:Zm00001d039316_T001SEG:seg
Description
Reticulon-like protein B4
Coordinates
chr3:-:1541745..1544236
Molecular Weight (calculated)
33689.0 Da
IEP (calculated)
8.760
GRAVY (calculated)
0.053
Length
306 amino acids
Sequence
(BLAST)
001: MAEQTQPQGE GGASPKHESL MEKLADKLHV GGGKADSSSS SDSDSDERPR PSAPPADELK QPSFSDAAAT AAAEAKAKVF RLFGREQPIH KALGGGKRMV
101: LFPTLPMLLA IRLEISRSDL AADVFLWRNK NISAGVLGGA TAIWILFELL GYHLLTFVCH GLIFALGVLF LWSNASSFIH KAPPKIPEVI IPEDLVVNIA
201: LSTRYEINRA FANLRQIALG RDLKKFLMVI AGFWLLSVLG SCCNFLTLVY IVFVVLHTVP VLYEKYEDQI DSYGEKGWVE IKKQYAVFDE KVLSKVPRGP
301: AKDKKH
Best Arabidopsis Sequence Match ( AT2G46170.1 )
(BLAST)
001: MAEEIEKSVP TEESLMEKIS EKIHHHDSSS SSESEYEKPD SPSAVKAKIY RMFGREKPVH KVLGGGKPAD VFLWRDKKLS GAVLGVATAI WVLFELVEYH
101: LLSLLCHISI LALGGLFLWS NAHTLINKTS PQIPEIHVPE EAFLVVASSL RNELNQAFVI LRSIALGRDL KKFLMVVVGL WIISVVGNWF NFLTLVYICF
201: VILHTVPMLY EKHEDKVDPL AEKAMKELQK QYVVFDEKVL SKIPIASLKA KAKLG
Arabidopsis Description
RTNLB5Reticulon-like protein B5 [Source:UniProtKB/Swiss-Prot;Acc:O82352]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.