Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
mitochondrion: 27297264 plasma membrane: 27341663 mitochondrion: 29575040 |
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
msms PMID:
29575040
doi
Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d042329_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 86.14 | 85.71 |
| EES01977 | Sorghum | cytosol | 82.67 | 82.27 |
| Os01t0921600-01 | Rice | mitochondrion, plastid | 72.28 | 72.28 |
| TraesCS3B01G467700.1 | Wheat | golgi | 65.84 | 63.64 |
| TraesCS3D01G425100.1 | Wheat | cytosol | 65.35 | 63.16 |
| TraesCS3A01G429800.1 | Wheat | cytosol | 65.35 | 62.86 |
| Zm00001d040209_P001 | Maize | cytosol | 47.52 | 58.9 |
| Solyc02g068130.2.1 | Tomato | plastid | 57.92 | 57.35 |
| VIT_14s0068g02030.t01 | Wine grape | cytosol | 54.95 | 55.22 |
| GSMUA_Achr8P09300_001 | Banana | cytosol | 54.46 | 54.73 |
| GSMUA_AchrUn_... | Banana | cytosol | 54.46 | 54.73 |
| KRG94268 | Soybean | nucleus | 54.95 | 53.11 |
| KRH57705 | Soybean | nucleus | 53.96 | 51.9 |
| PGSC0003DMT400052223 | Potato | cytosol | 51.49 | 50.73 |
| PGSC0003DMT400056939 | Potato | cytosol | 41.58 | 49.7 |
| Solyc02g094140.2.1 | Tomato | cytosol | 50.0 | 49.51 |
| KRH31475 | Soybean | mitochondrion | 49.01 | 49.25 |
| AT1G27390.1 | Thale cress | cytosol | 50.49 | 48.57 |
| GSMUA_Achr8P00740_001 | Banana | cytosol | 40.1 | 47.37 |
| CDY34181 | Canola | cytosol | 46.04 | 46.73 |
| Bra032980.1-P | Field mustard | cytosol | 46.04 | 46.73 |
| AT5G40930.1 | Thale cress | cytosol | 43.07 | 46.52 |
| CDX84923 | Canola | cytosol | 47.03 | 45.67 |
| CDY28496 | Canola | cytosol | 45.54 | 45.54 |
| PGSC0003DMT400056935 | Potato | cytosol | 43.07 | 45.31 |
| CDY27615 | Canola | cytosol | 47.52 | 45.28 |
| Bra032826.1-P | Field mustard | cytosol | 47.52 | 45.28 |
| KRG97423 | Soybean | cytosol | 48.02 | 44.7 |
| AT3G27080.1 | Thale cress | cytosol | 43.07 | 43.07 |
| CDY03918 | Canola | cytosol | 44.06 | 42.79 |
| CDY11814 | Canola | cytosol | 42.08 | 40.87 |
| GSMUA_Achr8P00730_001 | Banana | plasma membrane, vacuole | 15.35 | 40.79 |
| CDY15710 | Canola | cytosol | 42.57 | 40.57 |
| Bra010946.1-P | Field mustard | cytosol | 41.58 | 40.19 |
| Bra030044.1-P | Field mustard | cytosol | 42.57 | 40.0 |
| CDX90082 | Canola | cytosol | 40.59 | 39.42 |
| HORVU3Hr1G094550.2 | Barley | plastid | 36.63 | 33.04 |
| CDY35747 | Canola | cytosol | 19.31 | 30.47 |
| AT3G27070.2 | Thale cress | plasma membrane | 33.17 | 27.02 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:23.2.1.5 | ProteinID:AQK98591.1 | ProteinID:AQK98593.1 | EMBL:BT060951 | UniProt:C0HF45 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005742 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0045040 | InterPro:IPR011990 | PFAM:PD102047 |
| PFAM:PF06552 | PANTHER:PTHR32409 | SUPFAM:SSF48452 | TMHMM:TMhelix | InterPro:TOM20_imprt_rcpt | InterPro:TPR-like_helical_dom_sf |
| UniParc:UPI0001948A07 | EnsemblPlantsGene:Zm00001d012017 | EnsemblPlants:Zm00001d012017_P002 | EnsemblPlants:Zm00001d012017_T002 | SEG:seg | : |
Description
Mitochondrial import receptor subunit TOM20-4
Coordinates
chr8:-:166554926..166558182
Molecular Weight (calculated)
22240.0 Da
IEP (calculated)
4.590
GRAVY (calculated)
-0.488
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMSDAERLF FFEMACNNSE VAYEQNPNDA DNLTRWGGAL LELSQMRNGP DSLKLLQDAE AKLEEALQID PNKSDALWCL GNAQTSHGFF TPDTAMANEF
101: FAKATECFQK AADVEPANEL YRKSLDLSAK APELHSEIHR QMASQAATQA SSASNPTQSR KKKKKDNEFW YDVCGWVILG AGICAWVGLA RASMPPPSAP
201: AT
101: FAKATECFQK AADVEPANEL YRKSLDLSAK APELHSEIHR QMASQAATQA SSASNPTQSR KKKKKDNEFW YDVCGWVILG AGICAWVGLA RASMPPPSAP
201: AT
001: MEFSTADFER LIMFEHARKN SEAQYKNDPL DSENLLKWGG ALLELSQFQP IPEAKLMLND AISKLEEALT INPGKHQALW CIANAYTAHA FYVHDPEEAK
101: EHFDKATEYF QRAENEDPGN DTYRKSLDSS LKAPELHMQF MNQGMGQQIL GGGGGGGGGG MASSNVSQSS KKKKRNTEFT YDVCGWIILA CGIVAWVGMA
201: KSLGPPPPAR
101: EHFDKATEYF QRAENEDPGN DTYRKSLDSS LKAPELHMQF MNQGMGQQIL GGGGGGGGGG MASSNVSQSS KKKKRNTEFT YDVCGWIILA CGIVAWVGMA
201: KSLGPPPPAR
Arabidopsis Description
TOM20-2TOM20-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7F2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.