Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 3
- cytosol 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P09300_001 | Banana | cytosol | 79.1 | 79.1 |
| GSMUA_Achr8P00740_001 | Banana | cytosol | 57.21 | 67.25 |
| EES01977 | Sorghum | cytosol | 59.7 | 59.11 |
| Zm00001d042329_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 58.71 | 58.13 |
| Os01t0921600-01 | Rice | mitochondrion, plastid | 58.21 | 57.92 |
| GSMUA_Achr8P00730_001 | Banana | plasma membrane, vacuole | 21.89 | 57.89 |
| Zm00001d012017_P002 | Maize | mitochondrion | 54.73 | 54.46 |
| TraesCS3B01G467700.1 | Wheat | golgi | 55.22 | 53.11 |
| TraesCS3D01G425100.1 | Wheat | cytosol | 55.22 | 53.11 |
| TraesCS3A01G429800.1 | Wheat | cytosol | 55.22 | 52.86 |
| Zm00001d040209_P001 | Maize | cytosol | 34.33 | 42.33 |
| HORVU3Hr1G094550.2 | Barley | plastid | 29.85 | 26.79 |
| HORVU7Hr1G075380.6 | Barley | cytosol, plastid | 18.91 | 23.17 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:23.2.1.5 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005742 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0045040 |
| EnsemblPlantsGene:GSMUA_AchrUn_randomG00960_001 | EnsemblPlants:GSMUA_AchrUn_randomP00960_001 | EnsemblPlants:GSMUA_AchrUn_randomT00960_001 | InterPro:IPR011990 | UniProt:M0U5A8 | PFAM:PD102047 |
| PFAM:PF06552 | PANTHER:PTHR32409 | SUPFAM:SSF48452 | TMHMM:TMhelix | InterPro:TOM20_imprt_rcpt | InterPro:TPR-like_helical_dom_sf |
| UniParc:UPI000295C751 | SEG:seg | : | : | : | : |
Description
Mitochondrial import receptor subunit TOM20 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG00960_001]
Coordinates
chrchrUn_random:-:3475323..3481322
Molecular Weight (calculated)
22360.5 Da
IEP (calculated)
5.887
GRAVY (calculated)
-0.448
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MELPQNDFDR IVFFEHARKT AEVVYAKNPL DADNLTRWGG ALLELSSFQS GSDSIKMVED AVSKLEEALE VNPSKHDTLW CLGNAHTSHA FYTPDHEAAK
101: VEFDKAAQCF RQAVELDPGN ELYLKSLELS NKAPELHQEL QRQMASQQAS QGATTASSMK TPKKKKDSDL KYDVLGWVIL AIGIVVWVGM AKSHVPPPPP
201: R
101: VEFDKAAQCF RQAVELDPGN ELYLKSLELS NKAPELHQEL QRQMASQQAS QGATTASSMK TPKKKKDSDL KYDVLGWVIL AIGIVVWVGM AKSHVPPPPP
201: R
001: MEFSTADFER LIMFEHARKN SEAQYKNDPL DSENLLKWGG ALLELSQFQP IPEAKLMLND AISKLEEALT INPGKHQALW CIANAYTAHA FYVHDPEEAK
101: EHFDKATEYF QRAENEDPGN DTYRKSLDSS LKAPELHMQF MNQGMGQQIL GGGGGGGGGG MASSNVSQSS KKKKRNTEFT YDVCGWIILA CGIVAWVGMA
201: KSLGPPPPAR
101: EHFDKATEYF QRAENEDPGN DTYRKSLDSS LKAPELHMQF MNQGMGQQIL GGGGGGGGGG MASSNVSQSS KKKKRNTEFT YDVCGWIILA CGIVAWVGMA
201: KSLGPPPPAR
Arabidopsis Description
TOM20-2TOM20-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7F2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.