Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d042329_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 63.8 | 51.23 |
| Zm00001d012017_P002 | Maize | mitochondrion | 58.9 | 47.52 |
| GSMUA_Achr8P00740_001 | Banana | cytosol | 39.26 | 37.43 |
| VIT_14s0068g02030.t01 | Wine grape | cytosol | 43.56 | 35.32 |
| GSMUA_AchrUn_... | Banana | cytosol | 42.33 | 34.33 |
| Solyc02g068130.2.1 | Tomato | plastid | 42.33 | 33.82 |
| GSMUA_Achr8P09300_001 | Banana | cytosol | 41.1 | 33.33 |
| KRG94268 | Soybean | nucleus | 39.26 | 30.62 |
| KRH57705 | Soybean | nucleus | 39.26 | 30.48 |
| Solyc02g094140.2.1 | Tomato | cytosol | 38.04 | 30.39 |
| PGSC0003DMT400052223 | Potato | cytosol | 38.04 | 30.24 |
| PGSC0003DMT400056939 | Potato | cytosol | 31.29 | 30.18 |
| AT5G40930.1 | Thale cress | cytosol | 33.74 | 29.41 |
| KRH31475 | Soybean | mitochondrion | 36.2 | 29.35 |
| AT1G27390.1 | Thale cress | cytosol | 36.81 | 28.57 |
| CDY27615 | Canola | cytosol | 36.2 | 27.83 |
| Bra032826.1-P | Field mustard | cytosol | 36.2 | 27.83 |
| HORVU7Hr1G075380.6 | Barley | cytosol, plastid | 27.61 | 27.44 |
| CDX84923 | Canola | cytosol | 34.97 | 27.4 |
| KRG97423 | Soybean | cytosol | 35.58 | 26.73 |
| PGSC0003DMT400056935 | Potato | cytosol | 31.29 | 26.56 |
| CDY11814 | Canola | cytosol | 33.74 | 26.44 |
| CDY03918 | Canola | cytosol | 33.74 | 26.44 |
| CDX90082 | Canola | cytosol | 33.13 | 25.96 |
| AT3G27080.1 | Thale cress | cytosol | 31.9 | 25.74 |
| Bra032980.1-P | Field mustard | cytosol | 31.29 | 25.63 |
| CDY34181 | Canola | cytosol | 31.29 | 25.63 |
| CDY15710 | Canola | cytosol | 33.13 | 25.47 |
| CDY28496 | Canola | cytosol | 31.29 | 25.25 |
| Bra030044.1-P | Field mustard | cytosol | 33.13 | 25.12 |
| Bra010946.1-P | Field mustard | cytosol | 31.9 | 24.88 |
| GSMUA_Achr8P00730_001 | Banana | plasma membrane, vacuole | 9.82 | 21.05 |
| CDY35747 | Canola | cytosol | 15.95 | 20.31 |
| AT3G27070.2 | Thale cress | plasma membrane | 25.77 | 16.94 |
Protein Annotations
| Gene3D:1.25.40.10 | Gene3D:2.60.260.20 | MapMan:23.2.1.5 | UniProt:A0A1D6MP43 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 |
| GO:GO:0005742 | GO:GO:0006457 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016043 | GO:GO:0045040 | GO:GO:0051082 | InterPro:HSP40/DnaJ_pept-bd | InterPro:IPR011990 | ProteinID:ONM30834.1 |
| PFAM:PD102047 | PFAM:PF06552 | PANTHER:PTHR32409 | SUPFAM:SSF48452 | SUPFAM:SSF49493 | InterPro:TOM20_imprt_rcpt |
| InterPro:TPR-like_helical_dom_sf | UniParc:UPI0002208825 | EnsemblPlantsGene:Zm00001d040209 | EnsemblPlants:Zm00001d040209_P001 | EnsemblPlants:Zm00001d040209_T001 | SEG:seg |
Description
Mitochondrial import receptor subunit TOM20-4
Coordinates
chr3:+:32076843..32079601
Molecular Weight (calculated)
18220.7 Da
IEP (calculated)
4.325
GRAVY (calculated)
-0.317
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMGGMSDAE RLFFFEMACK NSEVAYEQNP NDADNLTRWG GALLELSQVR TGPDSLKLLE DAEAKLEEAL QIDPNKSDAL WCLGNAQTSH GFFTPDNALW
101: CISMTSFLNV DSFKAINDEG MPMYQRPFMK GKLYIHFSVE FPDSLSPKQC KALEAVLPPK PVS
101: CISMTSFLNV DSFKAINDEG MPMYQRPFMK GKLYIHFSVE FPDSLSPKQC KALEAVLPPK PVS
001: MDKLNFFEEI RKDAEETYKL NPEDADNLMR WGEALLELSQ FQNVIDSLKM IQDAISKLED AILIDPMKHD AVWCLGNAYT SYARLTPDDT QARLNFGLAY
101: LFFGIAVAQQ PDNQVYHKSL EMADKAPQLH TGFHKNRLLS LLGGVETLAI PSPKVVKNKK SSDEKYIVMG WVILAIGVVA CISFRKLR
101: LFFGIAVAQQ PDNQVYHKSL EMADKAPQLH TGFHKNRLLS LLGGVETLAI PSPKVVKNKK SSDEKYIVMG WVILAIGVVA CISFRKLR
Arabidopsis Description
TOM20-1Translocase outer membrane 20-1 [Source:UniProtKB/TrEMBL;Acc:F4JEW8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.