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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 2
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d013817_P001
Zm00001d016727_P001
Zm00001d018662_P001
Zm00001d021861_P001
Zm00001d025020_P001
Zm00001d027680_P003
Zm00001d032483_P001
Zm00001d032568_P001
Zm00001d033054_P001
Zm00001d033664_P001
Zm00001d040150_P001
Zm00001d048402_P001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G15760.1 Zm00001d013817_P001 AT3G20510.1 21798944
AT1G15760.1 Zm00001d033054_P001 AT3G20510.1 21798944
AT1G15760.1 Zm00001d033664_P001 AT4G09580.1 21798944
AT1G15760.1 Zm00001d016727_P001 AT4G14950.1 21798944
AT1G15760.1 Zm00001d021861_P001 AT4G14950.1 21798944
AT1G15760.1 Zm00001d040150_P001 AT4G14950.1 21798944
AT1G15760.1 Zm00001d018662_P001 AT5G43460.1 21798944
AT1G15760.1 Zm00001d025020_P001 AT5G43460.1 21798944
AT1G15760.1 Zm00001d027680_P003 AT5G43460.1 21798944
AT1G15760.1 Zm00001d032483_P001 AT5G43460.1 21798944
AT1G15760.1 Zm00001d032568_P001 AT5G43460.1 21798944
AT1G15760.1 Zm00001d048402_P001 AT5G43460.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EER90109 Sorghum nucleus 70.15 63.51
Zm00001d046580_P001 Maize cytosol 63.18 60.19
TraesCS7B01G432100.1 Wheat cytosol 52.24 50.72
HORVU7Hr1G049610.2 Barley cytosol, extracellular, plastid 51.24 50.24
HORVU7Hr1G115240.1 Barley cytosol, extracellular, mitochondrion 51.74 50.24
TraesCS7D01G506000.1 Wheat cytosol, extracellular, mitochondrion 53.73 49.77
TraesCS7A01G515500.1 Wheat cytosol, extracellular, mitochondrion 53.73 49.54
Os06t0645500-01 Rice cytosol, nucleus, peroxisome 57.71 48.74
GSMUA_Achr9P26950_001 Banana cytosol 24.38 31.82
Zm00001d002096_P001 Maize cytosol 31.34 30.73
GSMUA_Achr8P25150_001 Banana cytosol 27.36 28.95
CDX87319 Canola cytosol 25.37 28.81
CDY39968 Canola cytosol 25.37 28.81
Bra035174.1-P Field mustard cytosol 25.37 28.81
Zm00001d037494_P001 Maize cytosol, extracellular, plastid 34.83 28.81
GSMUA_Achr8P17040_001 Banana cytosol 24.38 27.84
AT1G15760.1 Thale cress nucleus 27.86 27.72
KRH09696 Soybean cytosol 26.87 27.55
CDX67952 Canola cytosol 25.37 27.27
Bra003571.1-P Field mustard cytosol 25.37 27.27
PGSC0003DMT400073435 Potato cytosol 25.87 27.23
OQU80824 Sorghum plastid 27.36 27.09
GSMUA_Achr1P09970_001 Banana cytosol 25.87 27.08
Solyc06g068310.1.1 Tomato cytosol 25.87 26.94
GSMUA_Achr8P14710_001 Banana cytosol 23.38 26.7
AT1G80520.1 Thale cress nucleus 25.37 26.56
GSMUA_Achr4P09380_001 Banana cytosol 24.88 26.45
CDX79380 Canola cytosol 25.37 26.29
PGSC0003DMT400073434 Potato cytosol 17.41 26.12
KRH23610 Soybean cytosol 24.88 26.04
Solyc03g117340.1.1 Tomato cytosol 22.89 25.41
CDY36586 Canola nucleus 25.37 25.25
Bra026110.1-P Field mustard cytosol 25.37 25.25
CDY61373 Canola cytosol 25.37 25.25
Zm00001d045137_P001 Maize plastid 21.39 25.15
PGSC0003DMT400084778 Potato nucleus 22.89 24.6
AT2G12462.1 Thale cress cytosol 28.36 22.89
KRH47406 Soybean cytosol 22.89 22.66
VIT_09s0002g08420.t01 Wine grape golgi, plasma membrane 26.37 22.55
CDX93107 Canola cytosol 27.36 22.18
Bra013153.1-P Field mustard cytosol 27.36 22.18
CDY50403 Canola cytosol 27.36 22.18
Solyc03g117310.1.1 Tomato cytosol 22.39 21.43
PGSC0003DMT400036834 Potato nucleus 22.39 21.43
VIT_11s0118g00550.t01 Wine grape cytosol 26.37 21.12
KRH44503 Soybean cytosol 21.89 20.28
PGSC0003DMT400078859 Potato cytosol 23.88 18.97
Solyc07g007350.1.1 Tomato cytosol 23.38 18.43
KRH12842 Soybean cytosol, nucleus, plastid 24.88 17.61
KRH37823 Soybean nucleus 24.88 17.06
KRH20227 Soybean cytosol 24.88 16.95
KRH03583 Soybean nucleus 24.38 15.41
Protein Annotations
EnsemblPlants:Zm00001d036740_P001EnsemblPlants:Zm00001d036740_T001EnsemblPlantsGene:Zm00001d036740EntrezGene:100273200Gene3D:1.10.150.50GO:GO:0003674
GO:GO:0005488GO:GO:0005515InterPro:IPR001660InterPro:SAMInterPro:SAM/pointed_sfPANTHER:PTHR33915
PANTHER:PTHR33915:SF4PFAM:PF07647ProteinID:AQK81805.1SEG:segSUPFAM:SSF47769UniParc:UPI0002210958
UniProt:A0A1D6LQP3MapMan:35.2::::
Description
Sterile alpha motif (SAM) domain-containing protein
Coordinates
chr6:+:99520465..99521070
Molecular Weight (calculated)
20952.8 Da
IEP (calculated)
7.465
GRAVY (calculated)
-0.255
Length
201 amino acids
Sequence
(BLAST)
001: MDDDWCAWLA RTGLAPALAH EYGRLFSRNE LEPGDAAHFD HDLLKSMGIA VAKHRLEILK LAKEQAAASS GSRLARRATR CLSRCVRRLA GGGARRGAPS
101: SVAAVVPRIC SGDDAVQVGA VQRKSTGSAA KKMVLMITDG AAAVAGAGGL SGGGGARLSS AKASLMFHDE ECGTEEEEEG GAGTGNDDIK WDSMFQDLKP
201: T
Best Arabidopsis Sequence Match ( AT1G15760.1 )
(BLAST)
001: MEDWWFSWLS RTNLEPSLIH EYGLSFSQNE LEHEDISYFD HEFLQSMGIS IAKHRLEILK LARRDRKNSP PLTSRSISRV VTAIKKTRKC LSDHVRAWIR
101: REEESASSRA LVLVPKKTSN GIGKWRGGFL KRNKRSVMPS NGNGGLEKQE RLLLTNGTPC RIDSFSSPMV FDYSFKDEKL YAQDTYFEDI KWDSMFQNLK
201: PT
Arabidopsis Description
At1g15760 [Source:UniProtKB/TrEMBL;Acc:Q9LMQ8]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.