Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93107 | Canola | cytosol | 79.52 | 79.84 |
| Bra013153.1-P | Field mustard | cytosol | 79.12 | 79.44 |
| CDY50403 | Canola | cytosol | 79.12 | 79.44 |
| GSMUA_Achr9P26950_001 | Banana | cytosol | 18.47 | 29.87 |
| Zm00001d036740_P001 | Maize | cytosol | 22.89 | 28.36 |
| GSMUA_Achr4P09380_001 | Banana | cytosol | 20.88 | 27.51 |
| GSMUA_Achr1P09970_001 | Banana | cytosol | 20.88 | 27.08 |
| EER90109 | Sorghum | nucleus | 23.69 | 26.58 |
| GSMUA_Achr8P25150_001 | Banana | cytosol | 20.08 | 26.32 |
| GSMUA_Achr8P17040_001 | Banana | cytosol | 18.47 | 26.14 |
| EES11537 | Sorghum | cytosol | 19.28 | 25.81 |
| AT1G80520.1 | Thale cress | nucleus | 19.68 | 25.52 |
| Zm00001d046580_P001 | Maize | cytosol | 21.29 | 25.12 |
| GSMUA_Achr8P14710_001 | Banana | cytosol | 17.67 | 25.0 |
| Os04t0644100-01 | Rice | cytosol | 18.88 | 25.0 |
| Zm00001d002096_P001 | Maize | cytosol | 20.08 | 24.39 |
| AT1G15760.1 | Thale cress | nucleus | 19.68 | 24.26 |
| TraesCS7B01G432100.1 | Wheat | cytosol | 19.68 | 23.67 |
| Os06t0645500-01 | Rice | cytosol, nucleus, peroxisome | 22.49 | 23.53 |
| HORVU7Hr1G049610.2 | Barley | cytosol, extracellular, plastid | 19.28 | 23.41 |
| HORVU7Hr1G115240.1 | Barley | cytosol, extracellular, mitochondrion | 19.28 | 23.19 |
| VIT_11s0118g00550.t01 | Wine grape | cytosol | 23.29 | 23.11 |
| TraesCS7D01G506000.1 | Wheat | cytosol, extracellular, mitochondrion | 20.08 | 23.04 |
| PGSC0003DMT400078859 | Potato | cytosol | 23.29 | 22.92 |
| TraesCS2B01G547200.1 | Wheat | cytosol | 18.07 | 22.61 |
| TraesCS2A01G518900.1 | Wheat | cytosol | 18.88 | 22.38 |
| Solyc07g007350.1.1 | Tomato | cytosol | 22.89 | 22.35 |
| Zm00001d037494_P001 | Maize | cytosol, extracellular, plastid | 21.69 | 22.22 |
| KRH12842 | Soybean | cytosol, nucleus, plastid | 25.3 | 22.18 |
| TraesCS2D01G520300.1 | Wheat | cytosol | 18.47 | 22.12 |
| TraesCS7A01G515500.1 | Wheat | cytosol, extracellular, mitochondrion | 19.28 | 22.02 |
| KRH37823 | Soybean | nucleus | 25.3 | 21.5 |
| TraesCS7B01G044000.1 | Wheat | cytosol | 19.68 | 21.4 |
| TraesCS7A01G141900.1 | Wheat | cytosol | 19.28 | 20.87 |
| HORVU2Hr1G114860.1 | Barley | mitochondrion | 8.84 | 19.47 |
| TraesCS7D01G143100.1 | Wheat | cytosol | 18.07 | 19.4 |
| HORVU7Hr1G029260.1 | Barley | cytosol | 18.07 | 19.31 |
| Zm00001d045137_P001 | Maize | plastid | 13.25 | 19.3 |
| OQU75953 | Sorghum | cytosol | 19.68 | 18.56 |
| KRH20227 | Soybean | cytosol | 21.69 | 18.31 |
| KRH03583 | Soybean | nucleus | 21.29 | 16.67 |
| OQU80824 | Sorghum | plastid | 12.85 | 15.76 |
| Os06t0179100-00 | Rice | cytosol, nucleus | 15.26 | 12.54 |
Protein Annotations
| Gene3D:1.10.150.50 | MapMan:35.2 | EntrezGene:3768692 | ProteinID:AEC06199.1 | ArrayExpress:AT2G12462 | EnsemblPlantsGene:AT2G12462 |
| RefSeq:AT2G12462 | TAIR:AT2G12462 | RefSeq:AT2G12462-TAIR-G | EnsemblPlants:AT2G12462.1 | TAIR:AT2G12462.1 | EMBL:DQ487529 |
| GO:GO:0003674 | GO:GO:0005575 | GO:GO:0008150 | RefSeq:NP_001031348.1 | PO:PO:0000293 | PANTHER:PTHR33915 |
| PANTHER:PTHR33915:SF3 | UniProt:Q1G3Q5 | InterPro:SAM/pointed_sf | SUPFAM:SSF47769 | UniParc:UPI00005DBFE4 | SEG:seg |
Description
Sterile alpha motif (SAM) domain protein [Source:UniProtKB/TrEMBL;Acc:Q1G3Q5]
Coordinates
chr2:-:5050434..5051613
Molecular Weight (calculated)
28198.1 Da
IEP (calculated)
10.818
GRAVY (calculated)
-0.527
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MDWFSWLSKT DLDPTLSYEY GLIFAQKKLQ GEDIALFNHN FLRRLGVTVT KHRVEILKLS KRETQALSSY NHRPVSAKLI SVVIKATKSV GNRLNKWLSL
101: GGTAVVEPLK EKQSPPPAYR TGAFLTGNNN KVNAEKAVVQ VERLPVIKRK RIVKSGPLDR NHGIQEKMTL VSNRSMNLSG PLDRSVQERL ILAYRSPIVS
201: GQLDGNLNER LRLSGPLKGR PPSPSVYVEY NKRDDDTRWD AMFHNLKPT
101: GGTAVVEPLK EKQSPPPAYR TGAFLTGNNN KVNAEKAVVQ VERLPVIKRK RIVKSGPLDR NHGIQEKMTL VSNRSMNLSG PLDRSVQERL ILAYRSPIVS
201: GQLDGNLNER LRLSGPLKGR PPSPSVYVEY NKRDDDTRWD AMFHNLKPT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.