CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92848
EER93600
EER99579
KXG36347
KXG38150
OQU81217

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15760.1	KXG36347	AT3G20510.1	21798944
AT1G15760.1	KXG38150	AT3G20510.1	21798944
AT1G15760.1	EER93600	AT4G09580.1	21798944
AT1G15760.1	EER99579	AT4G14950.1	21798944
AT1G15760.1	EER92848	AT5G43460.1	21798944
AT1G15760.1	OQU81217	AT5G43460.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90109	Sorghum	nucleus	34.48	31.53
Zm00001d046580_P001	Maize	cytosol	30.05	28.91
TraesCS7B01G432100.1	Wheat	cytosol	29.06	28.5
HORVU7Hr1G049610.2	Barley	cytosol, extracellular, plastid	28.57	28.29
HORVU7Hr1G115240.1	Barley	cytosol, extracellular, mitochondrion	28.57	28.02
Zm00001d036740_P001	Maize	cytosol	27.09	27.36
TraesCS7D01G506000.1	Wheat	cytosol, extracellular, mitochondrion	29.06	27.19
TraesCS7A01G515500.1	Wheat	cytosol, extracellular, mitochondrion	29.06	27.06
Os06t0645500-01	Rice	cytosol, nucleus, peroxisome	27.59	23.53
EES11537	Sorghum	cytosol	21.18	23.12
GSMUA_Achr9P26950_001	Banana	cytosol	16.26	21.43
PGSC0003DMT400073434	Potato	cytosol	13.3	20.15
CDY39968	Canola	cytosol	16.26	18.64
GSMUA_Achr8P25150_001	Banana	cytosol	17.24	18.42
CDX87319	Canola	cytosol	15.76	18.08
Bra035174.1-P	Field mustard	cytosol	15.76	18.08
GSMUA_Achr4P09380_001	Banana	cytosol	16.75	17.99
GSMUA_Achr8P14710_001	Banana	cytosol	15.27	17.61
GSMUA_Achr8P17040_001	Banana	cytosol	15.27	17.61
CDX67952	Canola	cytosol	15.76	17.11
AT1G80520.1	Thale cress	nucleus	15.76	16.67
Bra003571.1-P	Field mustard	cytosol	15.27	16.58
CDX79380	Canola	cytosol	15.76	16.49
OQU75953	Sorghum	cytosol	21.18	16.29
PGSC0003DMT400073435	Potato	cytosol	15.27	16.23
GSMUA_Achr1P09970_001	Banana	cytosol	15.27	16.15
Solyc06g068310.1.1	Tomato	cytosol	15.27	16.06
PGSC0003DMT400084778	Potato	nucleus	14.78	16.04
Solyc03g117340.1.1	Tomato	cytosol	14.29	16.02
KRH47406	Soybean	cytosol	15.76	15.76
KRH23610	Soybean	cytosol	14.78	15.62
KRH09696	Soybean	cytosol	14.78	15.31
VIT_09s0002g08420.t01	Wine grape	golgi, plasma membrane	17.24	14.89
AT1G15760.1	Thale cress	nucleus	14.78	14.85
Bra026110.1-P	Field mustard	cytosol	14.78	14.85
CDY36586	Canola	nucleus	14.78	14.85
CDY61373	Canola	cytosol	14.78	14.85
KRH44503	Soybean	cytosol	15.76	14.75
VIT_11s0118g00550.t01	Wine grape	cytosol	16.75	13.55
PGSC0003DMT400036834	Potato	nucleus	13.79	13.33
Solyc03g117310.1.1	Tomato	cytosol	13.3	12.86
AT2G12462.1	Thale cress	cytosol	15.76	12.85
PGSC0003DMT400078859	Potato	cytosol	15.27	12.25
CDX93107	Canola	cytosol	14.78	12.1
Bra013153.1-P	Field mustard	cytosol	14.78	12.1
CDY50403	Canola	cytosol	14.78	12.1
KRH12842	Soybean	cytosol, nucleus, plastid	16.75	11.97
KRH20227	Soybean	cytosol	17.24	11.86
Solyc07g007350.1.1	Tomato	cytosol	14.78	11.76
KRH03583	Soybean	nucleus	17.73	11.32
KRH37823	Soybean	nucleus	15.76	10.92

Protein Annotations

EnsemblPlants:OQU80824	EnsemblPlantsGene:SORBI_3007G193000	PANTHER:PTHR33915	PANTHER:PTHR33915:SF4	ProteinID:OQU80824	ProteinID:OQU80824.1
SEG:seg	UniParc:UPI000B8BA0A7	UniProt:A0A1Z5RAM5	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr7:-:62536121..62538940

Molecular Weight (calculated)

22313.4 Da

IEP (calculated)

11.090

GRAVY (calculated)

-0.674

Length

203 amino acids

Sequence
(BLAST)

001: MLWAWWTPGC PHSSFGHIPA ARRRSAGGTP ASSSKWCWKR ELREGQGSRH CATRMDWYAW LSRTGLAPSL TYVYERLFSR NELEPRDAAH FDHDLLEILK
101: LAKKQAAAAG DDGAEAAGAG AACLSRCMRR LAEGGDGGGR RRRGASSITV DPRIYSGDDD LRPSRMGAHL SRSARRGTPP PSPRRPATTT CGLLASNAWV
201: RRR

Best Arabidopsis Sequence Match ( AT1G80520.1 )
(BLAST)

001: MDWFSWLSRT NLEASLIYEY GLSFSNNELE YEDIAYFNHE FLQSMGISIA KHRLEILKLA RRDRKPSPLT ARSIFRVLIA IKKTGKCFSE HVRAWIRREE
101: SSRALVVVSR STSSSGNGRW KSARKKRLVM PSNGNGVKEE RLLLTNGTPC RLDSFSNPKV SSGYEDDDNH WGNKDVEEKI KWDSMFQNLK PT

Arabidopsis Description

Sterile alpha motif (SAM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9M8M0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.