Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- peroxisome 1
- plastid 1
- plasma membrane 2
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
GSMUA_Achr4P09380_001 | Banana | cytosol | 55.19 | 44.97 |
GSMUA_Achr8P14710_001 | Banana | cytosol | 51.3 | 44.89 |
GSMUA_Achr8P17040_001 | Banana | cytosol | 50.65 | 44.32 |
KRH09696 | Soybean | cytosol | 52.6 | 41.33 |
CDY39968 | Canola | cytosol | 47.4 | 41.24 |
CDX79380 | Canola | cytosol | 51.3 | 40.72 |
Bra035174.1-P | Field mustard | cytosol | 46.75 | 40.68 |
CDX87319 | Canola | cytosol | 46.75 | 40.68 |
CDX67952 | Canola | cytosol | 49.35 | 40.64 |
AT1G80520.1 | Thale cress | nucleus | 50.65 | 40.62 |
Bra003571.1-P | Field mustard | cytosol | 48.7 | 40.11 |
GSMUA_Achr1P09970_001 | Banana | cytosol | 50.0 | 40.1 |
KRH23610 | Soybean | cytosol | 49.35 | 39.58 |
Solyc03g117340.1.1 | Tomato | cytosol | 46.1 | 39.23 |
PGSC0003DMT400084778 | Potato | nucleus | 46.75 | 38.5 |
VIT_09s0002g08420.t01 | Wine grape | golgi, plasma membrane | 57.14 | 37.45 |
PGSC0003DMT400073434 | Potato | cytosol | 32.47 | 37.31 |
PGSC0003DMT400073435 | Potato | cytosol | 46.1 | 37.17 |
CDY36586 | Canola | nucleus | 48.7 | 37.13 |
Bra026110.1-P | Field mustard | cytosol | 48.7 | 37.13 |
CDY61373 | Canola | cytosol | 48.7 | 37.13 |
AT1G15760.1 | Thale cress | nucleus | 48.7 | 37.13 |
GSMUA_Achr8P25150_001 | Banana | cytosol | 44.81 | 36.32 |
Solyc06g068310.1.1 | Tomato | cytosol | 44.81 | 35.75 |
KRH47406 | Soybean | cytosol | 46.75 | 35.47 |
KRH44503 | Soybean | cytosol | 46.75 | 33.18 |
Solyc03g117310.1.1 | Tomato | cytosol | 44.16 | 32.38 |
PGSC0003DMT400036834 | Potato | nucleus | 42.86 | 31.43 |
Os04t0644100-01 | Rice | cytosol | 35.71 | 29.26 |
EES11537 | Sorghum | cytosol | 32.47 | 26.88 |
VIT_11s0118g00550.t01 | Wine grape | cytosol | 41.56 | 25.5 |
Zm00001d002096_P001 | Maize | cytosol | 33.77 | 25.37 |
Solyc07g007350.1.1 | Tomato | cytosol | 41.56 | 25.1 |
PGSC0003DMT400078859 | Potato | cytosol | 40.91 | 24.9 |
HORVU7Hr1G049610.2 | Barley | cytosol, extracellular, plastid | 32.47 | 24.39 |
Zm00001d036740_P001 | Maize | cytosol | 31.82 | 24.38 |
TraesCS2B01G547200.1 | Wheat | cytosol | 31.17 | 24.12 |
TraesCS7B01G432100.1 | Wheat | cytosol | 31.82 | 23.67 |
HORVU7Hr1G115240.1 | Barley | cytosol, extracellular, mitochondrion | 31.82 | 23.67 |
TraesCS7D01G506000.1 | Wheat | cytosol, extracellular, mitochondrion | 33.12 | 23.5 |
EER90109 | Sorghum | nucleus | 33.77 | 23.42 |
TraesCS2A01G518900.1 | Wheat | cytosol | 31.17 | 22.86 |
Zm00001d046580_P001 | Maize | cytosol | 31.17 | 22.75 |
TraesCS2D01G520300.1 | Wheat | cytosol | 30.52 | 22.6 |
TraesCS7B01G044000.1 | Wheat | cytosol | 33.12 | 22.27 |
Zm00001d037494_P001 | Maize | cytosol, extracellular, plastid | 35.06 | 22.22 |
HORVU2Hr1G114860.1 | Barley | mitochondrion | 16.23 | 22.12 |
TraesCS7A01G515500.1 | Wheat | cytosol, extracellular, mitochondrion | 31.17 | 22.02 |
TraesCS7D01G143100.1 | Wheat | cytosol | 33.12 | 21.98 |
Os06t0645500-01 | Rice | cytosol, nucleus, peroxisome | 33.77 | 21.85 |
TraesCS7A01G141900.1 | Wheat | cytosol | 32.47 | 21.74 |
HORVU7Hr1G029260.1 | Barley | cytosol | 32.47 | 21.46 |
OQU75953 | Sorghum | cytosol | 35.71 | 20.83 |
KRH12842 | Soybean | cytosol, nucleus, plastid | 38.31 | 20.77 |
KRH20227 | Soybean | cytosol | 37.66 | 19.66 |
KRH37823 | Soybean | nucleus | 37.01 | 19.45 |
KRH03583 | Soybean | nucleus | 38.31 | 18.55 |
AT2G12462.1 | Thale cress | cytosol | 29.87 | 18.47 |
Zm00001d045137_P001 | Maize | plastid | 19.48 | 17.54 |
Bra013153.1-P | Field mustard | cytosol | 26.62 | 16.53 |
CDX93107 | Canola | cytosol | 26.62 | 16.53 |
CDY50403 | Canola | cytosol | 26.62 | 16.53 |
OQU80824 | Sorghum | plastid | 21.43 | 16.26 |
Os06t0179100-00 | Rice | cytosol, nucleus | 23.38 | 11.88 |
Protein Annotations
EnsemblPlants:GSMUA_Achr9P26950_001 | EnsemblPlants:GSMUA_Achr9T26950_001 | EnsemblPlantsGene:GSMUA_Achr9G26950_001 | Gene3D:1.10.150.50 | GO:GO:0003674 | GO:GO:0005488 |
GO:GO:0005515 | InterPro:IPR001660 | InterPro:SAM | InterPro:SAM/pointed_sf | PANTHER:PTHR33915 | PANTHER:PTHR33915:SF1 |
PFAM:PF07647 | SUPFAM:SSF47769 | UniParc:UPI0002954136 | UniProt:M0U3V2 | MapMan:35.2 | : |
Description
jp18, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr9G26950_001]
Coordinates
chr9:+:31278455..31278991
Molecular Weight (calculated)
17440.4 Da
IEP (calculated)
10.646
GRAVY (calculated)
-0.244
Length
154 amino acids
Sequence
(BLAST)
(BLAST)
001: MDWYSWLSES SLDPGLVSEY ALLFSNNELV EDDIAHFNHE FLLSMGVSIG KHRLEILKLA KKGMYRSPRS VARLLAAISM TRSCIAKYVR SLVRRNSSAI
101: VVVPRPSYNG GAAPRGNMLK RNKKLVKSKQ RELLLTDGGV KIRWDSMFQD LKPT
101: VVVPRPSYNG GAAPRGNMLK RNKKLVKSKQ RELLLTDGGV KIRWDSMFQD LKPT
001: MEDWWFSWLS RTNLEPSLIH EYGLSFSQNE LEHEDISYFD HEFLQSMGIS IAKHRLEILK LARRDRKNSP PLTSRSISRV VTAIKKTRKC LSDHVRAWIR
101: REEESASSRA LVLVPKKTSN GIGKWRGGFL KRNKRSVMPS NGNGGLEKQE RLLLTNGTPC RIDSFSSPMV FDYSFKDEKL YAQDTYFEDI KWDSMFQNLK
201: PT
101: REEESASSRA LVLVPKKTSN GIGKWRGGFL KRNKRSVMPS NGNGGLEKQE RLLLTNGTPC RIDSFSSPMV FDYSFKDEKL YAQDTYFEDI KWDSMFQNLK
201: PT
Arabidopsis Description
At1g15760 [Source:UniProtKB/TrEMBL;Acc:Q9LMQ8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.