Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d046580_P001 | Maize | cytosol | 67.12 | 70.62 |
| Zm00001d036740_P001 | Maize | cytosol | 63.51 | 70.15 |
| HORVU7Hr1G049610.2 | Barley | cytosol, extracellular, plastid | 58.11 | 62.93 |
| HORVU7Hr1G115240.1 | Barley | cytosol, extracellular, mitochondrion | 58.56 | 62.8 |
| TraesCS7B01G432100.1 | Wheat | cytosol | 58.56 | 62.8 |
| TraesCS7D01G506000.1 | Wheat | cytosol, extracellular, mitochondrion | 59.46 | 60.83 |
| TraesCS7A01G515500.1 | Wheat | cytosol, extracellular, mitochondrion | 58.56 | 59.63 |
| Os06t0645500-01 | Rice | cytosol, nucleus, peroxisome | 62.61 | 58.4 |
| EES11537 | Sorghum | cytosol | 32.43 | 38.71 |
| OQU80824 | Sorghum | plastid | 31.53 | 34.48 |
| GSMUA_Achr9P26950_001 | Banana | cytosol | 23.42 | 33.77 |
| GSMUA_Achr8P25150_001 | Banana | cytosol | 27.48 | 32.11 |
| Bra035174.1-P | Field mustard | cytosol | 25.23 | 31.64 |
| CDY39968 | Canola | cytosol | 25.23 | 31.64 |
| CDX87319 | Canola | cytosol | 25.23 | 31.64 |
| CDX67952 | Canola | cytosol | 26.58 | 31.55 |
| Bra003571.1-P | Field mustard | cytosol | 26.13 | 31.02 |
| PGSC0003DMT400073435 | Potato | cytosol | 26.58 | 30.89 |
| Solyc06g068310.1.1 | Tomato | cytosol | 26.58 | 30.57 |
| GSMUA_Achr8P14710_001 | Banana | cytosol | 23.87 | 30.11 |
| GSMUA_Achr8P17040_001 | Banana | cytosol | 23.87 | 30.11 |
| CDX79380 | Canola | cytosol | 26.13 | 29.9 |
| KRH23610 | Soybean | cytosol | 25.68 | 29.69 |
| AT1G80520.1 | Thale cress | nucleus | 25.68 | 29.69 |
| GSMUA_Achr4P09380_001 | Banana | cytosol | 25.23 | 29.63 |
| KRH09696 | Soybean | cytosol | 26.13 | 29.59 |
| GSMUA_Achr1P09970_001 | Banana | cytosol | 25.23 | 29.17 |
| AT1G15760.1 | Thale cress | nucleus | 26.13 | 28.71 |
| PGSC0003DMT400084778 | Potato | nucleus | 23.87 | 28.34 |
| Solyc03g117340.1.1 | Tomato | cytosol | 22.97 | 28.18 |
| PGSC0003DMT400073434 | Potato | cytosol | 16.67 | 27.61 |
| Bra026110.1-P | Field mustard | cytosol | 24.77 | 27.23 |
| CDY36586 | Canola | nucleus | 24.77 | 27.23 |
| CDY61373 | Canola | cytosol | 24.32 | 26.73 |
| OQU75953 | Sorghum | cytosol | 31.08 | 26.14 |
| VIT_09s0002g08420.t01 | Wine grape | golgi, plasma membrane | 26.58 | 25.11 |
| PGSC0003DMT400036834 | Potato | nucleus | 22.97 | 24.29 |
| Solyc03g117310.1.1 | Tomato | cytosol | 22.97 | 24.29 |
| VIT_11s0118g00550.t01 | Wine grape | cytosol | 27.03 | 23.9 |
| AT2G12462.1 | Thale cress | cytosol | 26.58 | 23.69 |
| KRH47406 | Soybean | cytosol | 21.17 | 23.15 |
| CDY50403 | Canola | cytosol | 25.68 | 22.98 |
| CDX93107 | Canola | cytosol | 25.68 | 22.98 |
| Bra013153.1-P | Field mustard | cytosol | 25.68 | 22.98 |
| KRH44503 | Soybean | cytosol | 20.72 | 21.2 |
| PGSC0003DMT400078859 | Potato | cytosol | 23.42 | 20.55 |
| KRH12842 | Soybean | cytosol, nucleus, plastid | 25.68 | 20.07 |
| Solyc07g007350.1.1 | Tomato | cytosol | 22.97 | 20.0 |
| KRH37823 | Soybean | nucleus | 26.13 | 19.8 |
| KRH20227 | Soybean | cytosol | 25.68 | 19.32 |
| KRH03583 | Soybean | nucleus | 26.13 | 18.24 |
Protein Annotations
| EnsemblPlants:EER90109 | EnsemblPlantsGene:SORBI_3010G206400 | EntrezGene:8058409 | Gene3D:1.10.150.50 | InterPro:SAM/pointed_sf | PANTHER:PTHR33915 |
| PANTHER:PTHR33915:SF4 | ProteinID:EER90109 | ProteinID:EER90109.1 | RefSeq:XP_002438742.1 | SEG:seg | SUPFAM:SSF47769 |
| UniParc:UPI0001A89A95 | UniProt:C5Z6Q8 | MapMan:35.2 | : | : | : |
Description
hypothetical protein
Coordinates
chr10:-:54951310..54952934
Molecular Weight (calculated)
23526.3 Da
IEP (calculated)
5.692
GRAVY (calculated)
-0.543
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: MDWYAWLSRT GLAPSLTYEY GRLFSRNELE PGDAAHFDHD LLKSMGIAVA KHRLEILKLA KKQADDGAEA AGASSSAASR LARRATRCLS RCVRRLAGGG
101: GRDGGGRSRR GASSVTVVPR ICSGDDAVRV GAVQRKSTGS ASATKKMVLM ITDGVVAGGA GLRGGGARLS ASSQKASLMF HDCYHDEDED DEEGGEDDDE
201: DGGAGDDDDI KWDSMFQDLK PT
101: GRDGGGRSRR GASSVTVVPR ICSGDDAVRV GAVQRKSTGS ASATKKMVLM ITDGVVAGGA GLRGGGARLS ASSQKASLMF HDCYHDEDED DEEGGEDDDE
201: DGGAGDDDDI KWDSMFQDLK PT
001: MEDWWFSWLS RTNLEPSLIH EYGLSFSQNE LEHEDISYFD HEFLQSMGIS IAKHRLEILK LARRDRKNSP PLTSRSISRV VTAIKKTRKC LSDHVRAWIR
101: REEESASSRA LVLVPKKTSN GIGKWRGGFL KRNKRSVMPS NGNGGLEKQE RLLLTNGTPC RIDSFSSPMV FDYSFKDEKL YAQDTYFEDI KWDSMFQNLK
201: PT
101: REEESASSRA LVLVPKKTSN GIGKWRGGFL KRNKRSVMPS NGNGGLEKQE RLLLTNGTPC RIDSFSSPMV FDYSFKDEKL YAQDTYFEDI KWDSMFQNLK
201: PT
Arabidopsis Description
At1g15760 [Source:UniProtKB/TrEMBL;Acc:Q9LMQ8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.