Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g007350.1.1 | Tomato | cytosol | 96.44 | 95.69 |
| PGSC0003DMT400073434 | Potato | cytosol | 22.92 | 43.28 |
| GSMUA_Achr9P26950_001 | Banana | cytosol | 24.9 | 40.91 |
| PGSC0003DMT400073435 | Potato | cytosol | 30.83 | 40.84 |
| VIT_11s0118g00550.t01 | Wine grape | cytosol | 37.55 | 37.85 |
| GSMUA_Achr1P09970_001 | Banana | cytosol | 28.46 | 37.5 |
| PGSC0003DMT400084778 | Potato | nucleus | 27.67 | 37.43 |
| GSMUA_Achr8P17040_001 | Banana | cytosol | 25.3 | 36.36 |
| GSMUA_Achr8P25150_001 | Banana | cytosol | 26.09 | 34.74 |
| GSMUA_Achr8P14710_001 | Banana | cytosol | 24.11 | 34.66 |
| GSMUA_Achr4P09380_001 | Banana | cytosol | 25.3 | 33.86 |
| KRH12842 | Soybean | cytosol, nucleus, plastid | 37.94 | 33.8 |
| KRH37823 | Soybean | nucleus | 38.34 | 33.11 |
| PGSC0003DMT400036834 | Potato | nucleus | 27.27 | 32.86 |
| Os04t0644100-01 | Rice | cytosol | 23.32 | 31.38 |
| KRH20227 | Soybean | cytosol | 35.57 | 30.51 |
| TraesCS2B01G547200.1 | Wheat | cytosol | 22.92 | 29.15 |
| EES11537 | Sorghum | cytosol | 20.16 | 27.42 |
| KRH03583 | Soybean | nucleus | 34.39 | 27.36 |
| TraesCS2A01G518900.1 | Wheat | cytosol | 22.53 | 27.14 |
| TraesCS2D01G520300.1 | Wheat | cytosol | 22.13 | 26.92 |
| Zm00001d002096_P001 | Maize | cytosol | 20.95 | 25.85 |
| TraesCS7D01G506000.1 | Wheat | cytosol, extracellular, mitochondrion | 22.13 | 25.81 |
| HORVU7Hr1G115240.1 | Barley | cytosol, extracellular, mitochondrion | 20.95 | 25.6 |
| TraesCS7B01G432100.1 | Wheat | cytosol | 20.55 | 25.12 |
| HORVU7Hr1G049610.2 | Barley | cytosol, extracellular, plastid | 20.16 | 24.88 |
| HORVU2Hr1G114860.1 | Barley | mitochondrion | 11.07 | 24.78 |
| TraesCS7A01G515500.1 | Wheat | cytosol, extracellular, mitochondrion | 20.95 | 24.31 |
| Zm00001d046580_P001 | Maize | cytosol | 20.16 | 24.17 |
| Zm00001d036740_P001 | Maize | cytosol | 18.97 | 23.88 |
| EER90109 | Sorghum | nucleus | 20.55 | 23.42 |
| AT2G12462.1 | Thale cress | cytosol | 22.92 | 23.29 |
| CDY50403 | Canola | cytosol | 22.13 | 22.58 |
| CDX93107 | Canola | cytosol | 22.13 | 22.58 |
| Bra013153.1-P | Field mustard | cytosol | 22.13 | 22.58 |
| TraesCS7B01G044000.1 | Wheat | cytosol | 20.16 | 22.27 |
| Os06t0645500-01 | Rice | cytosol, nucleus, peroxisome | 20.95 | 22.27 |
| TraesCS7D01G143100.1 | Wheat | cytosol | 19.76 | 21.55 |
| OQU75953 | Sorghum | cytosol | 22.13 | 21.21 |
| HORVU7Hr1G029260.1 | Barley | cytosol | 19.37 | 21.03 |
| Zm00001d037494_P001 | Maize | cytosol, extracellular, plastid | 20.16 | 20.99 |
| TraesCS7A01G141900.1 | Wheat | cytosol | 18.97 | 20.87 |
| Zm00001d045137_P001 | Maize | plastid | 11.86 | 17.54 |
| OQU80824 | Sorghum | plastid | 12.25 | 15.27 |
| Os06t0179100-00 | Rice | cytosol, nucleus | 14.62 | 12.21 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400078859 | EnsemblPlantsGene:PGSC0003DMG400030691 | Gene3D:1.10.150.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001660 | InterPro:SAM | InterPro:SAM/pointed_sf | PANTHER:PTHR33915 | PANTHER:PTHR33915:SF3 | PFAM:PF07647 |
| PGSC:PGSC0003DMG400030691 | SEG:seg | SUPFAM:SSF47769 | UniParc:UPI0002966EA7 | UniProt:M1D0V0 | MapMan:35.2 |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400030691]
Coordinates
chr7:-:3314393..3315623
Molecular Weight (calculated)
28822.9 Da
IEP (calculated)
10.417
GRAVY (calculated)
-0.612
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MKNMDWYSWL SKTSLDQELI YEYGLVFSRN ELQKEDLIYF NHEFLQSMGI IVAKHRLEIL KLARKEGGGG GGTTSSSNGL SRLVLAINKT KKLLAKNLSK
101: LSIHRASTRL ALSELKPYRT QWTGALRKLE SSKEEKAIVT TRSMTMKSGP LDRRMQDKFM ATNRNLSASG PLDGRVLQEK LMYPNRSPMK SGPLDRRYKD
201: SAVYPSRINK SGPLDAMGYS SPRLNHYNQE MIPADDGVIY SQWSLMFQDM KPT
101: LSIHRASTRL ALSELKPYRT QWTGALRKLE SSKEEKAIVT TRSMTMKSGP LDRRMQDKFM ATNRNLSASG PLDGRVLQEK LMYPNRSPMK SGPLDRRYKD
201: SAVYPSRINK SGPLDAMGYS SPRLNHYNQE MIPADDGVIY SQWSLMFQDM KPT
001: MDWFSWLSKT DLDPTLSYEY GLIFAQKKLQ GEDIALFNHN FLRRLGVTVT KHRVEILKLS KRETQALSSY NHRPVSAKLI SVVIKATKSV GNRLNKWLSL
101: GGTAVVEPLK EKQSPPPAYR TGAFLTGNNN KVNAEKAVVQ VERLPVIKRK RIVKSGPLDR NHGIQEKMTL VSNRSMNLSG PLDRSVQERL ILAYRSPIVS
201: GQLDGNLNER LRLSGPLKGR PPSPSVYVEY NKRDDDTRWD AMFHNLKPT
101: GGTAVVEPLK EKQSPPPAYR TGAFLTGNNN KVNAEKAVVQ VERLPVIKRK RIVKSGPLDR NHGIQEKMTL VSNRSMNLSG PLDRSVQERL ILAYRSPIVS
201: GQLDGNLNER LRLSGPLKGR PPSPSVYVEY NKRDDDTRWD AMFHNLKPT
Arabidopsis Description
Sterile alpha motif (SAM) domain protein [Source:UniProtKB/TrEMBL;Acc:Q1G3Q5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.