Factsheet for TraesCS7D01G143100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G026900.1
TraesCS2A01G197700.1
TraesCS2B01G040200.1
TraesCS2B01G225100.1
TraesCS2D01G029000.1
TraesCS2D01G205700.1
TraesCS4A01G272200.1
TraesCS4A01G415500.1
TraesCS4B01G041800.1
TraesCS4B01G316300.1
TraesCS4D01G039000.1
TraesCS4D01G312900.1
TraesCS7A01G190000.1
TraesCS7B01G095100.1
TraesCS7D01G191200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15760.1	TraesCS7A01G190000.1	AT3G20510.1	21798944
AT1G15760.1	TraesCS7B01G095100.1	AT3G20510.1	21798944
AT1G15760.1	TraesCS7D01G191200.1	AT3G20510.1	21798944
AT1G15760.1	TraesCS4A01G272200.1	AT4G09580.1	21798944
AT1G15760.1	TraesCS4B01G041800.1	AT4G09580.1	21798944
AT1G15760.1	TraesCS4D01G039000.1	AT4G09580.1	21798944
AT1G15760.1	TraesCS2A01G197700.1	AT4G14950.1	21798944
AT1G15760.1	TraesCS2B01G225100.1	AT4G14950.1	21798944
AT1G15760.1	TraesCS2D01G205700.1	AT4G14950.1	21798944
AT1G15760.1	TraesCS2A01G026900.1	AT5G43460.1	21798944
AT1G15760.1	TraesCS2B01G040200.1	AT5G43460.1	21798944
AT1G15760.1	TraesCS2D01G029000.1	AT5G43460.1	21798944
AT1G15760.1	TraesCS4A01G415500.1	AT5G43460.1	21798944
AT1G15760.1	TraesCS4B01G316300.1	AT5G43460.1	21798944
AT1G15760.1	TraesCS4D01G312900.1	AT5G43460.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G029260.1	Barley	cytosol	90.09	89.7
TraesCS7B01G044000.1	Wheat	cytosol	80.6	81.66
TraesCS7A01G141900.1	Wheat	cytosol	77.59	78.26
Zm00001d037494_P001	Maize	cytosol, extracellular, plastid	43.1	41.15
OQU75953	Sorghum	cytosol	45.26	39.77
Zm00001d045137_P001	Maize	plastid	29.31	39.77
TraesCS7D01G506000.1	Wheat	cytosol, extracellular, mitochondrion	31.9	34.1
GSMUA_Achr9P26950_001	Banana	cytosol	21.98	33.12
TraesCS2D01G520300.1	Wheat	cytosol	29.31	32.69
GSMUA_Achr8P17040_001	Banana	cytosol	23.28	30.68
GSMUA_Achr8P14710_001	Banana	cytosol	22.84	30.11
GSMUA_Achr8P25150_001	Banana	cytosol	22.84	27.89
Bra035174.1-P	Field mustard	cytosol	20.69	27.12
KRH23610	Soybean	cytosol	22.41	27.08
CDX87319	Canola	cytosol	20.26	26.55
CDY39968	Canola	cytosol	20.26	26.55
GSMUA_Achr1P09970_001	Banana	cytosol	21.55	26.04
GSMUA_Achr4P09380_001	Banana	cytosol	21.12	25.93
KRH09696	Soybean	cytosol	21.55	25.51
PGSC0003DMT400073435	Potato	cytosol	20.69	25.13
AT1G80520.1	Thale cress	nucleus	20.69	25.0
Solyc03g117340.1.1	Tomato	cytosol	19.4	24.86
Bra003571.1-P	Field mustard	cytosol	19.83	24.6
CDX67952	Canola	cytosol	19.83	24.6
CDX79380	Canola	cytosol	20.26	24.23
PGSC0003DMT400073434	Potato	cytosol	13.79	23.88
Solyc06g068310.1.1	Tomato	cytosol	19.83	23.83
PGSC0003DMT400084778	Potato	nucleus	18.97	23.53
CDY61373	Canola	cytosol	20.26	23.27
Solyc03g117310.1.1	Tomato	cytosol	20.69	22.86
Bra026110.1-P	Field mustard	cytosol	19.83	22.77
CDY36586	Canola	nucleus	19.83	22.77
PGSC0003DMT400036834	Potato	nucleus	20.26	22.38
Os06t0179100-00	Rice	cytosol, nucleus	28.88	22.11
AT1G15760.1	Thale cress	nucleus	18.97	21.78
VIT_09s0002g08420.t01	Wine grape	golgi, plasma membrane	21.98	21.7
KRH47406	Soybean	cytosol	18.53	21.18
VIT_11s0118g00550.t01	Wine grape	cytosol	21.55	19.92
PGSC0003DMT400078859	Potato	cytosol	21.55	19.76
Solyc07g007350.1.1	Tomato	cytosol	21.12	19.22
KRH44503	Soybean	cytosol	17.67	18.89
AT2G12462.1	Thale cress	cytosol	19.4	18.07
KRH20227	Soybean	cytosol	21.12	16.61
KRH12842	Soybean	cytosol, nucleus, plastid	20.26	16.55
CDX93107	Canola	cytosol	17.67	16.53
Bra013153.1-P	Field mustard	cytosol	17.67	16.53
CDY50403	Canola	cytosol	17.67	16.53
KRH37823	Soybean	nucleus	19.83	15.7
KRH03583	Soybean	nucleus	20.69	15.09

Protein Annotations

EnsemblPlants:TraesCS7D01G143100.1	EnsemblPlantsGene:TraesCS7D01G143100	Gene3D:1.10.150.50	InterPro:SAM/pointed_sf	PANTHER:PTHR33915	SEG:seg
SUPFAM:SSF47769	TIGR:cd09487	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr7D:-:91142756..91143821

Molecular Weight (calculated)

24821.4 Da

IEP (calculated)

7.506

GRAVY (calculated)

-0.322

Length

232 amino acids

Sequence
(BLAST)

001: MDWYEWLRRA GLGEDLAAEY ALLFARNELG AADVRHLDHA FLATMGVAVA KHRLEILKLA RKESSASAAI TVLPWRATRL LAAAAQRSAR SLAGCLRSAA
101: RRGRSKAAVA PRPLALCHQG VAGPARWKGA PTAADGREVT KRKLAALLTR VGKPMHTLTN SAQKPTTKKG AVASPTTYMA TAIVAGCFAS TETCDSDYDA
201: DDDEDEDAEM GDGGGEDPET PWESMFQDLN PT

Best Arabidopsis Sequence Match ( AT1G15760.1 )
(BLAST)

001: MEDWWFSWLS RTNLEPSLIH EYGLSFSQNE LEHEDISYFD HEFLQSMGIS IAKHRLEILK LARRDRKNSP PLTSRSISRV VTAIKKTRKC LSDHVRAWIR
101: REEESASSRA LVLVPKKTSN GIGKWRGGFL KRNKRSVMPS NGNGGLEKQE RLLLTNGTPC RIDSFSSPMV FDYSFKDEKL YAQDTYFEDI KWDSMFQNLK
201: PT

Arabidopsis Description

At1g15760 [Source:UniProtKB/TrEMBL;Acc:Q9LMQ8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.