Factsheet for TraesCS2D01G029000.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G171000.1
TraesCS1B01G186300.1
TraesCS1D01G168700.2
TraesCS2A01G368500.1
TraesCS2A01G590600.1
TraesCS2B01G385700.2
TraesCS2B01G593000.1
TraesCS2D01G365300.2
TraesCS2D01G563600.1
TraesCS2D01G563700.1
TraesCS6A01G237600.1
TraesCS6A01G272000.1
TraesCS6B01G266100.1
TraesCS6B01G299600.1
TraesCS6D01G220300.1
TraesCS6D01G252200.1
TraesCS7A01G300700.1
TraesCS7D01G296400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04340.1	TraesCS1A01G171000.1	AT1G03630.1	21798944
AT1G04340.1	TraesCS1B01G186300.1	AT1G03630.1	21798944
AT1G04340.1	TraesCS1D01G168700.2	AT1G03630.1	21798944
AT1G04340.1	TraesCS2A01G590600.1	AT1G03630.1	21798944
AT1G04340.1	TraesCS2B01G593000.1	AT1G03630.1	21798944
AT1G04340.1	TraesCS2D01G563600.1	AT1G03630.1	21798944
AT1G04340.1	TraesCS2D01G563700.1	AT1G03630.1	21798944
AT1G04340.1	TraesCS6A01G272000.1	AT3G50910.1	21798944
AT1G04340.1	TraesCS6B01G299600.1	AT3G50910.1	21798944
AT1G04340.1	TraesCS6D01G252200.1	AT3G50910.1	21798944
AT5G43460.1	TraesCS2A01G368500.1	AT3G60600.1	21798944
AT5G43460.1	TraesCS2B01G385700.2	AT3G60600.1	21798944
AT5G43460.1	TraesCS2D01G365300.2	AT3G60600.1	21798944
AT5G43460.1	TraesCS6A01G237600.1	AT3G60600.1	21798944
AT5G43460.1	TraesCS6B01G266100.1	AT3G60600.1	21798944
AT5G43460.1	TraesCS6D01G220300.1	AT3G60600.1	21798944
AT5G43460.1	TraesCS7A01G300700.1	AT3G60600.1	21798944
AT5G43460.1	TraesCS7D01G296400.1	AT3G60600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G026900.1	Wheat	extracellular	99.36	99.36
TraesCS2B01G040200.1	Wheat	extracellular	98.73	98.73
Os04t0181100-01	Rice	plasma membrane	84.71	84.71
OQU81217	Sorghum	extracellular	78.98	78.98
GSMUA_Achr4P26720_001	Banana	extracellular	73.25	73.72
GSMUA_Achr1P01370_001	Banana	extracellular	71.34	71.79
GSMUA_Achr8P14320_001	Banana	plasma membrane	71.34	70.89
TraesCS4D01G312900.1	Wheat	extracellular	70.7	70.7
GSMUA_Achr11P...	Banana	endoplasmic reticulum, extracellular, plasma membrane	68.15	68.15
KRH32166	Soybean	endoplasmic reticulum	59.87	60.26
KRH67349	Soybean	plasma membrane	59.87	59.87
KRG95647	Soybean	plasma membrane	57.32	57.32
Solyc09g089670.2.1	Tomato	extracellular, plasma membrane, vacuole	58.6	57.14
KRH19536	Soybean	endoplasmic reticulum	56.05	56.41
VIT_05s0049g00200.t01	Wine grape	extracellular	56.05	56.05
CDY12771	Canola	extracellular	53.5	53.85
Bra041032.1-P	Field mustard	extracellular	52.87	53.21
CDY12466	Canola	endoplasmic reticulum	53.5	53.16
CDY47153	Canola	endoplasmic reticulum	53.5	53.16
CDY59304	Canola	plasma membrane	52.87	52.87
CDY49421	Canola	extracellular	52.23	52.56
Bra039861.1-P	Field mustard	plasma membrane	52.87	52.53
AT1G04340.1	Thale cress	plasma membrane	52.87	52.2
AT5G43460.1	Thale cress	extracellular	50.96	51.95
AT4G14420.1	Thale cress	plasma membrane	52.23	51.9
KRG90387	Soybean	extracellular	51.59	51.59
CDY32939	Canola	plasma membrane	51.59	51.59
Bra027498.1-P	Field mustard	plasma membrane	51.59	51.59
Solyc03g005470.2.1	Tomato	plastid	51.59	51.27
KRH31721	Soybean	endoplasmic reticulum	50.96	50.96
KRG92302	Soybean	extracellular	50.96	50.96
CDY60669	Canola	extracellular, plasma membrane, vacuole	52.23	50.62
Bra015305.1-P	Field mustard	extracellular, plasma membrane, vacuole	52.23	50.62
Zm00001d025020_P001	Maize	extracellular, golgi, plasma membrane	77.71	50.41
KRH34500	Soybean	extracellular	50.32	50.32
CDX86640	Canola	extracellular, plasma membrane, vacuole	52.23	50.0
CDY18220	Canola	extracellular, plasma membrane, vacuole	51.59	50.0
CDY15499	Canola	plasma membrane	52.23	49.7
Bra030565.1-P	Field mustard	plasma membrane	52.23	49.7
Solyc06g053660.2.1	Tomato	plasma membrane	48.41	48.41
PGSC0003DMT400044245	Potato	cytosol	49.04	43.5
VIT_05s0049g00210.t01	Wine grape	plastid	59.87	40.87
PGSC0003DMT400034860	Potato	plastid	45.86	39.13
KRH73866	Soybean	plastid	35.03	36.91
CDY10063	Canola	plasma membrane	39.49	34.25
PGSC0003DMT400042097	Potato	cytosol	41.4	33.33

Protein Annotations

EnsemblPlants:TraesCS2D01G029000.1	EnsemblPlantsGene:TraesCS2D01G029000	InterPro:HR_lesion	PANTHER:PTHR31474	PANTHER:PTHR31474:SF5	PFAM:PF05514
SEG:seg	SignalP:SignalP-noTM	TMHMM:TMhelix	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr2D:+:11840914..11843154

Molecular Weight (calculated)

17431.6 Da

IEP (calculated)

10.587

GRAVY (calculated)

0.566

Length

157 amino acids

Sequence
(BLAST)

001: MGFVSFVGRV LFASVFLLSA YQEFSEFGTD GGPAAKSLKP KFNLFVKQVS AGIGMAVPHI DIKSVIAFTM FLKAFGGLLF IISSSFGALV LLVYLAFITP
101: VVYDFYNYEM ESQQFAKLFT MFSQNLALFG ALLFFLGMKN SIPRRHSKRR TAKAKTT

Best Arabidopsis Sequence Match ( AT1G04340.1 )
(BLAST)

001: MGFFSFLGRV LFASLFILSA WQMFNDFGTD GGPAAKELAP KLDLTKAHLS SILGVSLPNL EVKQVVWAIV ALKGLGGLLF VIGNIFGAYL LAVYLVVVSP
101: ILYDFYNYGP EDRQFSLLLT EFLQSVALLG ALLFFIGMKN STTSSKRILK KRTPKPKAA

Arabidopsis Description

At1g04340/F19P19_23 [Source:UniProtKB/TrEMBL;Acc:O22690]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.