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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • extracellular 7
  • golgi 5
  • plasma membrane 7
  • endoplasmic reticulum 5
  • vacuole 5
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, secretory
BaCelLo:secretory
EpiLoc:cytosol
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:extracellular
 plastid: 21433289
plasma membrane: 27800704
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 21433289 doi
S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os02t0643000-01
Os02t0704600-01
Os04t0534400-01
Os04t0678700-01
Os08t0156700-01
Os10t0496900-02

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G04340.1 Os04t0678700-01 AT1G03630.1 21798944
AT1G04340.1 Os10t0496900-02 AT1G03630.1 21798944
AT1G04340.1 Os02t0704600-01 AT3G50910.1 21798944
AT5G43460.1 Os02t0643000-01 AT3G60600.1 21798944
AT5G43460.1 Os04t0534400-01 AT3G60600.1 21798944
AT5G43460.1 Os08t0156700-01 AT3G60600.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2A01G026900.1 Wheat extracellular 85.35 85.35
TraesCS2D01G029000.1 Wheat extracellular 84.71 84.71
TraesCS2B01G040200.1 Wheat extracellular 84.71 84.71
OQU81217 Sorghum extracellular 84.08 84.08
Os03t0149200-01 Rice extracellular 75.8 75.8
GSMUA_Achr4P26720_001 Banana extracellular 74.52 75.0
GSMUA_Achr1P01370_001 Banana extracellular 74.52 75.0
GSMUA_Achr8P14320_001 Banana plasma membrane 73.89 73.42
GSMUA_Achr11P... Banana endoplasmic reticulum, extracellular, plasma membrane 70.7 70.7
Os10t0445500-01 Rice plasma membrane 66.88 66.46
KRH32166 Soybean endoplasmic reticulum 64.33 64.74
KRH67349 Soybean plasma membrane 64.33 64.33
KRG95647 Soybean plasma membrane 61.78 61.78
KRH19536 Soybean endoplasmic reticulum 60.51 60.9
VIT_05s0049g00200.t01 Wine grape extracellular 60.51 60.51
Solyc09g089670.2.1 Tomato extracellular, plasma membrane, vacuole 60.51 59.01
CDY12771 Canola extracellular 57.32 57.69
Bra041032.1-P Field mustard extracellular 56.69 57.05
CDY49421 Canola extracellular 56.05 56.41
CDY12466 Canola endoplasmic reticulum 56.69 56.33
CDY47153 Canola endoplasmic reticulum 56.69 56.33
Bra039861.1-P Field mustard plasma membrane 56.05 55.7
AT4G14420.1 Thale cress plasma membrane 55.41 55.06
CDY59304 Canola plasma membrane 54.14 54.14
KRH31721 Soybean endoplasmic reticulum 53.5 53.5
KRG90387 Soybean extracellular 53.5 53.5
Bra027498.1-P Field mustard plasma membrane 53.5 53.5
CDY32939 Canola plasma membrane 53.5 53.5
AT1G04340.1 Thale cress plasma membrane 54.14 53.46
Zm00001d025020_P001 Maize extracellular, golgi, plasma membrane 82.17 53.31
AT5G43460.1 Thale cress extracellular 52.23 53.25
Solyc03g005470.2.1 Tomato plastid 53.5 53.16
Bra015305.1-P Field mustard extracellular, plasma membrane, vacuole 54.14 52.47
CDY60669 Canola extracellular, plasma membrane, vacuole 54.14 52.47
KRH34500 Soybean extracellular 52.23 52.23
CDY18220 Canola extracellular, plasma membrane, vacuole 53.5 51.85
KRG92302 Soybean extracellular 51.59 51.59
CDX86640 Canola extracellular, plasma membrane, vacuole 53.5 51.22
Bra030565.1-P Field mustard plasma membrane 53.5 50.91
CDY15499 Canola plasma membrane 53.5 50.91
Solyc06g053660.2.1 Tomato plasma membrane 49.04 49.04
PGSC0003DMT400044245 Potato cytosol 50.96 45.2
VIT_05s0049g00210.t01 Wine grape plastid 61.78 42.17
PGSC0003DMT400034860 Potato plastid 48.41 41.3
KRH73866 Soybean plastid 35.67 37.58
CDY10063 Canola plasma membrane 41.4 35.91
PGSC0003DMT400042097 Potato cytosol 43.31 34.87
Protein Annotations
MapMan:35.2EntrezGene:4335098EMBL:AK241758ProteinID:BAF14093.1ProteinID:BAS87960.1ProteinID:CAE02035.2
ProteinID:EAZ29924.1GO:GO:0005575GO:GO:0016020GO:GO:0016021InterPro:HR_lesionEnsemblPlantsGene:Os04g0181100
EnsemblPlants:Os04t0181100-01PFAM:PF05514PANTHER:PTHR31474PANTHER:PTHR31474:SF5UniProt:Q7XSC5SignalP:SignalP-noTM
TMHMM:TMhelixUniParc:UPI00001B0FA3RefSeq:XP_015633483.1SEG:seg::
Description
HR-like lesion-inducer family protein. (Os04t0181100-01)
Coordinates
chr4:-:5526864..5530223
Molecular Weight (calculated)
17451.6 Da
IEP (calculated)
10.587
GRAVY (calculated)
0.489
Length
157 amino acids
Sequence
(BLAST)
001: MGFISFVGRV LFASIFLLSA YQEFSEFGTD GGPAAKALKP KFNLFTQQVS KSLGMAVPHI DIKTVIAATM FLKGFGGLLF IISSSFGAFL LLLYLAVITP
101: VVYDFYNYEM ESSQFVQLFV KFSQNLALFG ALLFFLGMKN SIPRRHSKRR AGKTKTN
Best Arabidopsis Sequence Match ( AT1G04340.1 )
(BLAST)
001: MGFFSFLGRV LFASLFILSA WQMFNDFGTD GGPAAKELAP KLDLTKAHLS SILGVSLPNL EVKQVVWAIV ALKGLGGLLF VIGNIFGAYL LAVYLVVVSP
101: ILYDFYNYGP EDRQFSLLLT EFLQSVALLG ALLFFIGMKN STTSSKRILK KRTPKPKAA
Arabidopsis Description
At1g04340/F19P19_23 [Source:UniProtKB/TrEMBL;Acc:O22690]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.