Factsheet for VIT_05s0049g00200.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0023g02110.t01
VIT_06s0080g00970.t01
VIT_12s0059g00270.t01
VIT_15s0048g00220.t01
VIT_19s0014g03160.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04340.1	VIT_12s0059g00270.t01	AT1G03630.1	21798944
AT1G04340.1	VIT_19s0014g03160.t01	AT1G03630.1	21798944
AT1G04340.1	VIT_04s0023g02110.t01	AT3G50910.1	21798944
AT5G43460.1	VIT_15s0048g00220.t01	AT3G60600.1	21798944
AT5G43460.1	VIT_06s0080g00970.t01	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90387	Soybean	extracellular	70.06	70.06
KRH31721	Soybean	endoplasmic reticulum	69.43	69.43
KRG92302	Soybean	extracellular	66.88	66.88
KRH34500	Soybean	extracellular	65.61	65.61
AT5G43460.1	Thale cress	extracellular	63.69	64.94
GSMUA_Achr11P...	Banana	endoplasmic reticulum, extracellular, plasma membrane	63.69	63.69
GSMUA_Achr1P01370_001	Banana	extracellular	62.42	62.82
CDY59304	Canola	plasma membrane	62.42	62.42
GSMUA_Achr2P04100_001	Banana	extracellular	62.42	62.03
Os03t0149200-01	Rice	extracellular	61.78	61.78
GSMUA_Achr4P26720_001	Banana	extracellular	61.15	61.54
AT1G04340.1	Thale cress	plasma membrane	61.78	61.01
CDY32939	Canola	plasma membrane	60.51	60.51
Os04t0181100-01	Rice	plasma membrane	60.51	60.51
Bra027498.1-P	Field mustard	plasma membrane	60.51	60.51
TraesCS4A01G415500.1	Wheat	extracellular	60.51	60.51
CDY60669	Canola	extracellular, plasma membrane, vacuole	61.78	59.88
CDY18220	Canola	extracellular, plasma membrane, vacuole	61.78	59.88
Bra015305.1-P	Field mustard	extracellular, plasma membrane, vacuole	61.78	59.88
TraesCS4D01G312900.1	Wheat	extracellular	59.87	59.87
HORVU4Hr1G080140.1	Barley	extracellular	59.87	59.87
TraesCS4B01G316300.1	Wheat	extracellular	59.24	59.24
CDY15499	Canola	plasma membrane	61.78	58.79
Bra030565.1-P	Field mustard	plasma membrane	61.78	58.79
Solyc06g053660.2.1	Tomato	plasma membrane	58.6	58.6
OQU81217	Sorghum	extracellular	58.6	58.6
CDX86640	Canola	extracellular, plasma membrane, vacuole	61.15	58.54
Os10t0445500-01	Rice	plasma membrane	58.6	58.23
Zm00001d048402_P001	Maize	extracellular, golgi, plasma membrane	57.96	57.96
EER92848	Sorghum	extracellular	57.96	57.96
GSMUA_Achr8P14320_001	Banana	plasma membrane	57.96	57.59
Zm00001d032568_P001	Maize	endoplasmic reticulum, extracellular, vacuole	39.49	57.41
Zm00001d027680_P003	Maize	endoplasmic reticulum, extracellular, plasma membrane	58.6	56.1
TraesCS2A01G026900.1	Wheat	extracellular	56.05	56.05
TraesCS2D01G029000.1	Wheat	extracellular	56.05	56.05
TraesCS2B01G040200.1	Wheat	extracellular	55.41	55.41
Zm00001d032483_P001	Maize	endoplasmic reticulum, extracellular, vacuole	42.04	53.23
Zm00001d018662_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	52.87	51.88
KRH73866	Soybean	plastid	46.5	48.99
VIT_05s0049g00210.t01	Wine grape	plastid	64.97	44.35
PGSC0003DMT400042097	Potato	cytosol	50.96	41.03
CDY10063	Canola	plasma membrane	45.22	39.23
Zm00001d025020_P001	Maize	extracellular, golgi, plasma membrane	56.69	36.78

Protein Annotations

EntrezGene:100256194	wikigene:100256194	MapMan:35.2	ProteinID:CBI23586	ProteinID:CBI23586.3	UniProt:D7SZA9
EMBL:FN595496	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:HR_lesion	EntrezGene:LOC100256194
wikigene:LOC100256194	PFAM:PF05514	PANTHER:PTHR31474	PANTHER:PTHR31474:SF4	SignalP:SignalP-noTM	TIGR:TC51876
TIGR:TC51983	TMHMM:TMhelix	UniParc:UPI00015C80AE	ArrayExpress:VIT_05s0049g00200	EnsemblPlantsGene:VIT_05s0049g00200	EnsemblPlants:VIT_05s0049g00200.t01
RefSeq:XP_002284568	RefSeq:XP_002284568.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5:-:7300692..7305089

Molecular Weight (calculated)

17559.1 Da

IEP (calculated)

10.255

GRAVY (calculated)

0.591

Length

157 amino acids

Sequence
(BLAST)

001: MGFFSFLGRL LFASIFILSA WQMFDEFGVD GGPAAKELIP KFTVIKQHIS SKLGLGVPNI DVRNLVATTI VLKGLGGILF VFGSSFGAYL LLLHLAITTP
101: LLYDFYNYEL NKPEFHLLLP EFLQSIALFG ALLFFLGMKN CIPRRQLKKK IPKTKTV

Best Arabidopsis Sequence Match ( AT1G04340.1 )
(BLAST)

001: MGFFSFLGRV LFASLFILSA WQMFNDFGTD GGPAAKELAP KLDLTKAHLS SILGVSLPNL EVKQVVWAIV ALKGLGGLLF VIGNIFGAYL LAVYLVVVSP
101: ILYDFYNYGP EDRQFSLLLT EFLQSVALLG ALLFFIGMKN STTSSKRILK KRTPKPKAA

Arabidopsis Description

At1g04340/F19P19_23 [Source:UniProtKB/TrEMBL;Acc:O22690]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.