Factsheet for VIT_19s0014g03160.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g03800.t01
VIT_04s0008g01350.t01
VIT_06s0080g00970.t01
VIT_09s0002g03770.t01
VIT_10s0003g01830.t01
VIT_12s0059g00270.t01
VIT_15s0048g00220.t01
VIT_19s0014g03160.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03630.1	VIT_12s0059g00270.t01	AT1G03630.1	21798944
AT1G03630.1	VIT_19s0014g03160.t01	AT1G03630.1	21798944
AT1G03630.1	VIT_01s0010g03800.t01	AT1G27300.1	21798944
AT1G03630.1	VIT_09s0002g03770.t01	AT3G16310.1	21798944
AT1G03630.1	VIT_15s0048g00220.t01	AT3G60600.1	21798944
AT1G03630.1	VIT_10s0003g01830.t01	AT4G19030.1	21798944
AT1G03630.1	VIT_12s0059g00270.t01	AT4G27440.1	21798944
AT1G03630.1	VIT_19s0014g03160.t01	AT4G27440.1	21798944
AT1G03630.1	VIT_04s0008g01350.t01	AT5G11980.1	21798944
AT1G03630.1	VIT_06s0080g00970.t01	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g013710.1.1	Tomato	extracellular, nucleus, plastid	85.1	84.89
PGSC0003DMT400039734	Potato	plastid	84.85	84.63
VIT_12s0059g00270.t01	Wine grape	plastid	84.85	84.21
Bra026349.1-P	Field mustard	plastid	81.82	83.51
CDX89249	Canola	plastid	83.59	83.38
KRH27209	Soybean	nucleus, plastid	83.84	83.21
CDY29311	Canola	plastid	83.33	83.12
Solyc10g006900.2.1	Tomato	plastid	82.58	82.78
KRH55334	Soybean	plastid	83.08	82.46
PGSC0003DMT400064369	Potato	plastid	82.58	82.16
AT5G54190.1	Thale cress	plastid	83.33	81.48
TraesCS2D01G563700.1	Wheat	cytosol	49.49	81.33
Bra019049.1-P	Field mustard	plastid	81.57	81.16
Bra003004.1-P	Field mustard	plastid	82.32	80.89
AT4G27440.1	Thale cress	plastid	81.82	80.8
CDY14325	Canola	plastid	82.32	80.69
KRH26074	Soybean	plastid	68.94	79.82
AT1G03630.1	Thale cress	plastid	79.55	78.55
Zm00001d013937_P001	Maize	plastid	78.54	78.54
CDY18175	Canola	plastid	79.29	78.5
CDY51384	Canola	plastid	78.79	78.39
GSMUA_Achr3P14270_001	Banana	plastid	76.52	78.29
CDX89877	Canola	plastid	79.04	78.25
Bra033415.1-P	Field mustard	plastid	79.04	78.25
CDX98171	Canola	plastid	68.94	78.22
CDY15470	Canola	plastid	78.54	78.14
CDY18309	Canola	plastid	68.69	77.94
EER94008	Sorghum	plastid	77.53	77.92
Bra030540.1-P	Field mustard	plastid	78.28	77.89
Zm00001d032576_P001	Maize	plastid	77.53	77.53
GSMUA_Achr11P...	Banana	plastid	77.53	77.53
HORVU1Hr1G044680.1	Barley	plastid	77.27	77.47
TraesCS1B01G186300.1	Wheat	plastid	76.77	76.96
GSMUA_Achr7P04280_001	Banana	plastid	75.76	75.38
Os10t0496900-02	Rice	plastid	76.26	75.12
Os04t0678700-01	Rice	plastid	73.23	74.94
EES11656	Sorghum	plastid	72.47	74.55
TraesCS2A01G590600.1	Wheat	plastid	72.98	74.48
TraesCS2D01G563600.1	Wheat	golgi, plastid	72.73	74.23
TraesCS2B01G593000.1	Wheat	plastid	72.73	74.23
TraesCS1A01G171000.1	Wheat	golgi, plastid	77.02	73.14
TraesCS1D01G168700.2	Wheat	plastid	77.02	73.14
Zm00001d001820_P001	Maize	plastid	70.45	72.09
HORVU4Hr1G073090.1	Barley	plastid	19.19	54.29
HORVU2Hr1G119050.2	Barley	mitochondrion	51.26	54.13
HORVU2Hr1G006120.3	Barley	plastid	16.41	53.28
HORVU5Hr1G104070.1	Barley	plastid	16.67	51.56
HORVU2Hr1G020490.1	Barley	plastid	20.96	51.23
CDX92832	Canola	plastid	81.82	50.86
CDY29840	Canola	plastid	81.06	50.71
VIT_16s0050g00760.t01	Wine grape	plastid	26.26	33.23
VIT_08s0040g03400.t01	Wine grape	plastid	26.77	32.72
VIT_02s0025g03380.t01	Wine grape	cytosol	25.76	32.38
VIT_02s0025g02190.t01	Wine grape	cytosol	23.23	27.38
VIT_17s0000g08920.t01	Wine grape	cytosol	22.73	27.27
HORVU2Hr1G119090.2	Barley	plastid	24.49	22.93
VIT_17s0000g00520.t01	Wine grape	cytosol, mitochondrion, peroxisome	21.21	22.64
VIT_16s0050g00750.t01	Wine grape	plastid	26.77	16.96

Protein Annotations

KEGG:00860+1.3.1.33	EntrezGene:100255647	wikigene:100255647	Gene3D:3.40.50.720	MapMan:7.12.6.5.1	ProteinID:CBI20339
ProteinID:CBI20339.3	UniProt:E0CSP0	EMBL:FN595229	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0015979	GO:GO:0015995	GO:GO:0016491
GO:GO:0016630	GO:GO:0055114	EntrezGene:LOC100255647	wikigene:LOC100255647	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106
PRINTS:PR00081	PANTHER:PTHR44419	PANTHER:PTHR44419:SF3	InterPro:Prochl_reduct	InterPro:SDR_fam	SUPFAM:SSF51735
TIGR:TC59048	TIGRFAMs:TIGR01289	UniParc:UPI00015C7A7B	ArrayExpress:VIT_19s0014g03160	EnsemblPlantsGene:VIT_19s0014g03160	EnsemblPlants:VIT_19s0014g03160.t01
unigene:Vvi.1221	RefSeq:XP_002284769	RefSeq:XP_002284769.2	SEG:seg	:	:

Description

NADPH-protochlorophyllide oxidoreductase [Source:UniProtKB/TrEMBL;Acc:E0CSP0]

Coordinates

chr19:-:3298278..3300500

Molecular Weight (calculated)

42817.3 Da

IEP (calculated)

9.968

GRAVY (calculated)

-0.196

Length

396 amino acids

Sequence
(BLAST)

001: MAMQAAALVP SAFSIPKEGK GSASFKESGL FGVSLSDHVK ADFSSSALRN KRKPSVGAIR AQTAATTPAI TRATPEGKKT LRKGTVVITG ASSGLGLATT
101: KALAETGKWH IIMACRDFLK AERAARSAGL SKENYTVMHL DLASLDSVRQ FVDNFKRSER PLDVLVCNAA VYLPTAKEPT FTADGFELSV GTNHLGHFLL
201: ARLLLDDLKQ SDYPSKRLII VGSITGNTNT LAGNVPPKAN LGDLRGMAGG LNGLNSSAMI DGGAFDGAKA YKDSKVCNML TMQEFHRRYH EDTGITFASL
301: YPGCIATTGL FREHIPLFRL LFPPFQKFIT KGYVSEEESG KRLAQVVSEP SLTKSGVYWS WNKNSASFEN QLSQEASDAD KARKVWELSE KLVRLA

Best Arabidopsis Sequence Match ( AT5G54190.1 )
(BLAST)

001: MALQAASLVS SAFSVRKDGK LNASASSSFK ESSLFGVSLS EQSKADFVSS SLRCKREQSL RNNKAIIRAQ AIATSTPSVT KSSLDRKKTL RKGNVVVTGA
101: SSGLGLATAK ALAETGKWHV IMACRDFLKA ERAAQSAGMP KDSYTVMHLD LASLDSVRQF VDNFRRAEMP LDVLVCNAAV YQPTANQPTF TAEGFELSVG
201: INHLGHFLLS RLLIDDLKNS DYPSKRLIIV GSITGNTNTL AGNVPPKANL GDLRGLAGGL NGLNSSAMID GGDFVGAKAY KDSKVCNMLT MQEFHRRFHE
301: DTGITFASLY PGCIATTGLF REHIPLFRTL FPPFQKYITK GYVSESEAGK RLAQVVADPS LTKSGVYWSW NKTSASFENQ LSQEASDVEK ARRVWEVSEK
401: LVGLA

Arabidopsis Description

PORAPORA [Source:UniProtKB/TrEMBL;Acc:A0A178UR02]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.