Factsheet for GSMUA_Achr11P01900_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P20280_001
GSMUA_Achr3P14270_001
GSMUA_Achr3P32460_001
GSMUA_Achr4P08270_001
GSMUA_Achr4P10230_001
GSMUA_Achr4P15460_001
GSMUA_Achr5P20880_001
GSMUA_Achr6P14800_001
GSMUA_Achr7P04280_001
GSMUA_Achr8P11120_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03630.1	GSMUA_Achr11P...	AT1G03630.1	21798944
AT1G03630.1	GSMUA_Achr3P14270_001	AT1G03630.1	21798944
AT1G03630.1	GSMUA_Achr7P04280_001	AT1G03630.1	21798944
AT1G03630.1	GSMUA_Achr4P08270_001	AT3G16310.1	21798944
AT1G03630.1	GSMUA_Achr4P15460_001	AT3G16310.1	21798944
AT1G03630.1	GSMUA_Achr6P14800_001	AT3G16310.1	21798944
AT1G03630.1	GSMUA_Achr11P...	AT3G60600.1	21798944
AT1G03630.1	GSMUA_Achr11P...	AT3G60600.1	21798944
AT1G03630.1	GSMUA_Achr1P20280_001	AT3G60600.1	21798944
AT1G03630.1	GSMUA_Achr5P20880_001	AT3G60600.1	21798944
AT1G03630.1	GSMUA_Achr8P11120_001	AT3G60600.1	21798944
AT1G03630.1	GSMUA_Achr4P10230_001	AT4G19030.1	21798944
AT1G03630.1	GSMUA_Achr11P...	AT4G27440.1	21798944
AT1G03630.1	GSMUA_Achr3P14270_001	AT4G27440.1	21798944
AT1G03630.1	GSMUA_Achr7P04280_001	AT4G27440.1	21798944
AT1G03630.1	GSMUA_Achr3P32460_001	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013937_P001	Maize	plastid	79.8	79.8
Zm00001d032576_P001	Maize	plastid	79.29	79.29
EER94008	Sorghum	plastid	78.54	78.93
GSMUA_Achr3P14270_001	Banana	plastid	76.77	78.55
HORVU1Hr1G044680.1	Barley	plastid	78.28	78.48
TraesCS1B01G186300.1	Wheat	plastid	77.78	77.97
Solyc10g006900.2.1	Tomato	plastid	77.78	77.97
GSMUA_Achr7P04280_001	Banana	plastid	78.28	77.89
VIT_19s0014g03160.t01	Wine grape	plastid	77.53	77.53
KRH55334	Soybean	plastid	78.03	77.44
KRH27209	Soybean	nucleus, plastid	77.78	77.19
PGSC0003DMT400064369	Potato	plastid	77.53	77.14
Solyc12g013710.1.1	Tomato	extracellular, nucleus, plastid	77.27	77.08
AT4G27440.1	Thale cress	plastid	78.03	77.06
Os10t0496900-02	Rice	plastid	78.03	76.87
PGSC0003DMT400039734	Potato	plastid	77.02	76.83
CDY29311	Canola	plastid	77.02	76.83
CDX89249	Canola	plastid	77.02	76.83
VIT_12s0059g00270.t01	Wine grape	plastid	77.27	76.69
PGSC0003DMT400047264	Potato	plastid	77.02	76.63
Bra026349.1-P	Field mustard	plastid	75.0	76.55
AT5G54190.1	Thale cress	plastid	78.03	76.3
Solyc07g054210.2.1	Tomato	plastid	76.77	76.19
KRH26074	Soybean	plastid	65.4	75.73
Bra019049.1-P	Field mustard	plastid	76.01	75.63
Bra003004.1-P	Field mustard	plastid	76.26	74.94
CDY14325	Canola	plastid	76.26	74.75
TraesCS1D01G168700.2	Wheat	plastid	78.03	74.1
TraesCS1A01G171000.1	Wheat	golgi, plastid	78.03	74.1
AT1G03630.1	Thale cress	plastid	74.75	73.82
CDY51384	Canola	plastid	73.99	73.62
Bra030540.1-P	Field mustard	plastid	73.99	73.62
CDY15470	Canola	plastid	73.99	73.62
CDY18175	Canola	plastid	74.24	73.5
Bra033415.1-P	Field mustard	plastid	73.99	73.25
CDX89877	Canola	plastid	73.99	73.25
CDX98171	Canola	plastid	63.38	71.92
CDY18309	Canola	plastid	63.13	71.63
GSMUA_AchrUn_...	Banana	cytosol	38.38	59.84
CDY29840	Canola	plastid	75.51	47.24
CDX92832	Canola	plastid	75.51	46.94
GSMUA_Achr7P15240_001	Banana	plastid	27.02	33.02
GSMUA_Achr11P...	Banana	cytosol	26.77	32.72
GSMUA_Achr2P18620_001	Banana	plastid	26.01	32.59
GSMUA_AchrUn_...	Banana	cytosol	25.76	32.59
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	26.01	32.09
GSMUA_Achr8P20890_001	Banana	cytosol, mitochondrion, plastid	25.51	31.56
GSMUA_Achr2P08080_001	Banana	mitochondrion	25.25	30.77
GSMUA_Achr8P11870_001	Banana	cytosol	24.49	28.53
GSMUA_Achr1P25440_001	Banana	cytosol	21.46	27.6
GSMUA_Achr11P...	Banana	cytosol	23.48	26.96
GSMUA_Achr7P04190_001	Banana	cytosol	21.72	20.98
GSMUA_Achr3P22130_001	Banana	cytosol	21.97	12.36

Protein Annotations

KEGG:00860+1.3.1.33	Gene3D:3.40.50.720	MapMan:7.12.6.5.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0015979	GO:GO:0015995	GO:GO:0016491
GO:GO:0016630	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr11G01900_001	EnsemblPlants:GSMUA_Achr11P01900_001	EnsemblPlants:GSMUA_Achr11T01900_001	UniProt:M0RNM0
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	PRINTS:PR00081	PANTHER:PTHR44419	PANTHER:PTHR44419:SF3	InterPro:Prochl_reduct
InterPro:SDR_fam	SUPFAM:SSF51735	TIGRFAMs:TIGR01289	UniParc:UPI0002951569	SEG:seg	:

Description

Protochlorophyllide reductase B, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr11G01900_001]

Coordinates

chr11:+:1298922..1300694

Molecular Weight (calculated)

42607.9 Da

IEP (calculated)

9.441

GRAVY (calculated)

-0.191

Length

396 amino acids

Sequence
(BLAST)

001: MALQASFLPS ALSAHKEGKA NGGAKDSAFL GVSLSETMKS DFSSSVLRSH KRNNLSAGIR AQTATTTPGV KSSAPDGKKT LRKGNVIVTG ASSGLGLATA
101: KALAETGRWN VIMACRDFLK AEKAAKSAGM AKENYQVMHL DLASLDSVRQ FVRNFRQSGL PLDVLVCNAA VYFPTAKEPT YTADGFEMSV GVNHLGHFLL
201: ARELLEDLKA SDYPSRRLII VGSITGNTNT LAGNIPPKAN LGDLRGLAGG LNGLGGSTMI DGGEFDGAKA YKDSKVCNML TMQEFHRRFH EETGVTFASL
301: YPGCIATTGL FREHVALFRL LFPPFQKYIT KGFVSEEEAG KRLAQVVIDP SLTKSGVYWS WNNNSASFEN QLSEEASDPE KAQRLWQLSE KLVGLA

Best Arabidopsis Sequence Match ( AT5G54190.1 )
(BLAST)

001: MALQAASLVS SAFSVRKDGK LNASASSSFK ESSLFGVSLS EQSKADFVSS SLRCKREQSL RNNKAIIRAQ AIATSTPSVT KSSLDRKKTL RKGNVVVTGA
101: SSGLGLATAK ALAETGKWHV IMACRDFLKA ERAAQSAGMP KDSYTVMHLD LASLDSVRQF VDNFRRAEMP LDVLVCNAAV YQPTANQPTF TAEGFELSVG
201: INHLGHFLLS RLLIDDLKNS DYPSKRLIIV GSITGNTNTL AGNVPPKANL GDLRGLAGGL NGLNSSAMID GGDFVGAKAY KDSKVCNMLT MQEFHRRFHE
301: DTGITFASLY PGCIATTGLF REHIPLFRTL FPPFQKYITK GYVSESEAGK RLAQVVADPS LTKSGVYWSW NKTSASFENQ LSQEASDVEK ARRVWEVSEK
401: LVGLA

Arabidopsis Description

PORAPORA [Source:UniProtKB/TrEMBL;Acc:A0A178UR02]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.