CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97393
KRH07953
KRH09922
KRH11076
KRH21197
KRH22653
KRH23409
KRH26074
KRH26664
KRH27209
KRH31520
KRH42923
KRH42926
KRH45251
KRH55334
KRH59035
KRH59036
KRH65384
KRH69706
KRH76090
KRH76164

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03630.1	KRH26074	AT1G03630.1	21798944
AT1G03630.1	KRH27209	AT1G03630.1	21798944
AT1G03630.1	KRH55334	AT1G03630.1	21798944
AT1G03630.1	KRG97393	AT1G27300.1	21798944
AT1G03630.1	KRH31520	AT1G27300.1	21798944
AT1G03630.1	KRH76090	AT1G27300.1	21798944
AT1G03630.1	KRH09922	AT3G16310.1	21798944
AT1G03630.1	KRH23409	AT3G16310.1	21798944
AT1G03630.1	KRH65384	AT3G60600.1	21798944
AT1G03630.1	KRH76164	AT3G60600.1	21798944
AT1G03630.1	KRH11076	AT4G19030.1	21798944
AT1G03630.1	KRH21197	AT4G19030.1	21798944
AT1G03630.1	KRH42923	AT4G19030.1	21798944
AT1G03630.1	KRH42926	AT4G19030.1	21798944
AT1G03630.1	KRH45251	AT4G19030.1	21798944
AT1G03630.1	KRH59035	AT4G19030.1	21798944
AT1G03630.1	KRH59036	AT4G19030.1	21798944
AT1G03630.1	KRH26074	AT4G27440.1	21798944
AT1G03630.1	KRH27209	AT4G27440.1	21798944
AT1G03630.1	KRH55334	AT4G27440.1	21798944
AT1G03630.1	KRH07953	AT5G11980.1	21798944
AT1G03630.1	KRH69706	AT5G11980.1	21798944
AT1G03630.1	KRH22653	AT5G22290.1	21798944
AT1G03630.1	KRH26664	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55334	Soybean	plastid	85.71	85.71
CDX89249	Canola	plastid	84.96	85.39
Bra026349.1-P	Field mustard	plastid	82.96	85.31
CDY29311	Canola	plastid	84.71	85.14
Bra019049.1-P	Field mustard	plastid	83.96	84.17
VIT_19s0014g03160.t01	Wine grape	plastid	83.21	83.84
AT4G27440.1	Thale cress	plastid	83.71	83.29
Solyc12g013710.1.1	Tomato	extracellular, nucleus, plastid	82.71	83.12
KRH26074	Soybean	plastid	71.18	83.04
AT5G54190.1	Thale cress	plastid	84.21	82.96
PGSC0003DMT400039734	Potato	plastid	82.46	82.87
Bra003004.1-P	Field mustard	plastid	82.96	82.13
Solyc10g006900.2.1	Tomato	plastid	80.95	81.77
PGSC0003DMT400064369	Potato	plastid	81.45	81.66
CDY14325	Canola	plastid	82.46	81.44
TraesCS2D01G563700.1	Wheat	cytosol	48.87	80.91
CDX98171	Canola	plastid	70.18	80.23
CDY18309	Canola	plastid	69.92	79.94
GSMUA_Achr11P...	Banana	plastid	77.19	77.78
EER94008	Sorghum	plastid	76.69	77.67
GSMUA_Achr3P14270_001	Banana	plastid	75.19	77.52
Zm00001d013937_P001	Maize	plastid	76.69	77.27
AT1G03630.1	Thale cress	plastid	77.44	77.06
Bra033415.1-P	Field mustard	plastid	77.19	77.0
CDY18175	Canola	plastid	77.19	77.0
CDX89877	Canola	plastid	77.19	77.0
CDY51384	Canola	plastid	76.69	76.88
CDY15470	Canola	plastid	76.69	76.88
Bra030540.1-P	Field mustard	plastid	76.44	76.63
Zm00001d032576_P001	Maize	plastid	75.94	76.52
HORVU1Hr1G044680.1	Barley	plastid	75.69	76.46
TraesCS1B01G186300.1	Wheat	plastid	75.44	76.2
TraesCS2D01G563600.1	Wheat	golgi, plastid	73.68	75.77
TraesCS2A01G590600.1	Wheat	plastid	73.43	75.52
TraesCS2B01G593000.1	Wheat	plastid	73.18	75.26
Os04t0678700-01	Rice	plastid	72.68	74.94
GSMUA_Achr7P04280_001	Banana	plastid	74.69	74.87
Os10t0496900-02	Rice	plastid	75.19	74.63
EES11656	Sorghum	plastid	71.68	74.29
Zm00001d001820_P001	Maize	plastid	71.18	73.39
TraesCS1A01G171000.1	Wheat	golgi, plastid	76.19	72.9
TraesCS1D01G168700.2	Wheat	plastid	75.94	72.66
HORVU4Hr1G073090.1	Barley	plastid	21.05	60.0
HORVU2Hr1G006120.3	Barley	plastid	18.05	59.02
HORVU5Hr1G104070.1	Barley	plastid	18.55	57.81
HORVU2Hr1G119050.2	Barley	mitochondrion	53.13	56.53
HORVU2Hr1G020490.1	Barley	plastid	22.31	54.94
CDY29840	Canola	plastid	83.71	52.76
CDX92832	Canola	plastid	83.71	52.43
KRH38433	Soybean	cytosol	27.32	34.17
KRH59919	Soybean	cytosol, plastid	26.32	33.33
KRH38419	Soybean	plastid	26.57	33.23
KRG91556	Soybean	cytosol	26.07	33.23
KRH08897	Soybean	cytosol, mitochondrion	26.07	33.12
KRH41194	Soybean	cytosol, plastid	25.81	32.7
KRH32305	Soybean	plastid	26.32	32.51
KRH19708	Soybean	nucleus	26.07	32.2
KRH08898	Soybean	cytosol	25.31	31.96
KRH67540	Soybean	nucleus	25.56	31.58
KRH08894	Soybean	plastid	17.04	31.34
KRH38426	Soybean	cytosol	25.31	30.98
KRH38432	Soybean	cytosol	24.56	30.72
KRG95813	Soybean	nucleus	24.81	30.65
KRH38431	Soybean	plastid	24.81	30.65
KRH35274	Soybean	cytosol, mitochondrion, plastid	26.07	28.97
KRH35271	Soybean	plastid	25.31	28.94
KRH54355	Soybean	cytosol	22.81	27.58
KRG91557	Soybean	cytosol	14.29	27.4
KRH57109	Soybean	mitochondrion	22.56	26.71
KRH63592	Soybean	plastid	22.81	25.56
KRH03249	Soybean	mitochondrion, plastid	21.55	25.52
KRH08895	Soybean	cytosol	24.31	25.39
KRH41377	Soybean	cytosol	21.05	24.93
KRH38907	Soybean	endoplasmic reticulum	21.05	22.22
KRH09442	Soybean	cytosol	20.8	22.02
HORVU2Hr1G119090.2	Barley	plastid	23.06	21.75

Protein Annotations

KEGG:00860+1.3.1.33	EntrezGene:100785637	Gene3D:3.40.50.720	MapMan:7.12.6.5.1	UniProt:A0A0R4J4S6	EMBL:ACUP02007786
EnsemblPlantsGene:GLYMA_12G222200	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0015979	GO:GO:0015995	GO:GO:0016491	GO:GO:0016630	GO:GO:0055114
EnsemblPlants:KRH27209	ProteinID:KRH27209	ProteinID:KRH27209.1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	PRINTS:PR00081
PANTHER:PTHR44419	PANTHER:PTHR44419:SF4	InterPro:Prochl_reduct	InterPro:SDR_fam	SUPFAM:SSF51735	TIGRFAMs:TIGR01289
UniParc:UPI00020819F8	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:38177734..38180746

Molecular Weight (calculated)

43247.8 Da

IEP (calculated)

9.109

GRAVY (calculated)

-0.152

Length

399 amino acids

Sequence
(BLAST)

001: MALQAASLVP ASFSVLKEGK SGVSLKDSTL FGLSFSEPIK ANFSSSALRC KREFEQKLCA VRAETVATAS PAVTKSTPEG KKTLRKGSVV ITGASSGLGL
101: ATAKALAETG KWHVIMACRD YLKAARAAKS AGMAKENYTI MHLDLASLDS VRQFVDNFRR SEMPLDVLVC NAAVYLPTAK EPTFTAEGFE LSVGTNHLGH
201: FLLSRLLLED LEKSDYPSKR LIIVGSITGN TNTLAGNVPP KANLGDLRGL QGGLNGLNSS AMIDGGDFDG AKAYKDSKVC NMLTMQEFHR RFHEETGITF
301: ASLYPGCIAT TGLFREHIPL FRTLFPPFQK YITKGYVSED EAGKRLAQVV SDPSLTKSGV YWSWNKASAS FENQLSQEAS DTEKARKIWE ISEKLVGFA

Best Arabidopsis Sequence Match ( AT5G54190.1 )
(BLAST)

001: MALQAASLVS SAFSVRKDGK LNASASSSFK ESSLFGVSLS EQSKADFVSS SLRCKREQSL RNNKAIIRAQ AIATSTPSVT KSSLDRKKTL RKGNVVVTGA
101: SSGLGLATAK ALAETGKWHV IMACRDFLKA ERAAQSAGMP KDSYTVMHLD LASLDSVRQF VDNFRRAEMP LDVLVCNAAV YQPTANQPTF TAEGFELSVG
201: INHLGHFLLS RLLIDDLKNS DYPSKRLIIV GSITGNTNTL AGNVPPKANL GDLRGLAGGL NGLNSSAMID GGDFVGAKAY KDSKVCNMLT MQEFHRRFHE
301: DTGITFASLY PGCIATTGLF REHIPLFRTL FPPFQKYITK GYVSESEAGK RLAQVVADPS LTKSGVYWSW NKTSASFENQ LSQEASDVEK ARRVWEVSEK
401: LVGLA

Arabidopsis Description

PORAPORA [Source:UniProtKB/TrEMBL;Acc:A0A178UR02]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.