Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G590600.1 | Wheat | plastid | 94.61 | 58.76 |
| TraesCS2B01G593000.1 | Wheat | plastid | 94.19 | 58.51 |
| TraesCS2D01G563600.1 | Wheat | golgi, plastid | 94.19 | 58.51 |
| EES11656 | Sorghum | plastid | 85.48 | 53.51 |
| Zm00001d001820_P001 | Maize | plastid | 84.65 | 52.71 |
| CDY18309 | Canola | plastid | 75.93 | 52.44 |
| CDX98171 | Canola | plastid | 75.93 | 52.44 |
| Os04t0678700-01 | Rice | plastid | 83.82 | 52.2 |
| GSMUA_Achr3P14270_001 | Banana | plastid | 82.57 | 51.42 |
| VIT_19s0014g03160.t01 | Wine grape | plastid | 81.33 | 49.49 |
| Solyc12g013710.1.1 | Tomato | extracellular, nucleus, plastid | 80.91 | 49.12 |
| KRH27209 | Soybean | nucleus, plastid | 80.91 | 48.87 |
| CDX89249 | Canola | plastid | 80.5 | 48.87 |
| CDY29311 | Canola | plastid | 80.5 | 48.87 |
| PGSC0003DMT400039734 | Potato | plastid | 80.5 | 48.87 |
| Solyc10g006900.2.1 | Tomato | plastid | 80.08 | 48.86 |
| KRH55334 | Soybean | plastid | 80.5 | 48.62 |
| PGSC0003DMT400064369 | Potato | plastid | 80.08 | 48.49 |
| GSMUA_Achr7P04280_001 | Banana | plastid | 80.08 | 48.49 |
| AT5G54190.1 | Thale cress | plastid | 81.33 | 48.4 |
| Bra019049.1-P | Field mustard | plastid | 79.25 | 47.99 |
| Bra026349.1-P | Field mustard | plastid | 77.18 | 47.94 |
| Bra003004.1-P | Field mustard | plastid | 80.08 | 47.89 |
| VIT_12s0059g00270.t01 | Wine grape | plastid | 79.25 | 47.87 |
| CDY14325 | Canola | plastid | 80.08 | 47.77 |
| KRH26074 | Soybean | plastid | 67.63 | 47.66 |
| AT4G27440.1 | Thale cress | plastid | 78.84 | 47.38 |
| TraesCS1D01G168700.2 | Wheat | plastid | 80.5 | 46.52 |
| CDX89877 | Canola | plastid | 77.18 | 46.5 |
| Bra033415.1-P | Field mustard | plastid | 76.76 | 46.25 |
| CDY51384 | Canola | plastid | 76.35 | 46.23 |
| Bra030540.1-P | Field mustard | plastid | 75.93 | 45.98 |
| CDY15470 | Canola | plastid | 75.93 | 45.98 |
| PGSC0003DMT400047264 | Potato | plastid | 75.93 | 45.98 |
| AT1G03630.1 | Thale cress | plastid | 76.35 | 45.89 |
| CDY18175 | Canola | plastid | 75.93 | 45.75 |
| Solyc07g054210.2.1 | Tomato | plastid | 75.52 | 45.61 |
| HORVU2Hr1G119050.2 | Barley | mitochondrion | 60.58 | 38.93 |
| CDX92832 | Canola | plastid | 79.67 | 30.14 |
| CDY29840 | Canola | plastid | 78.42 | 29.86 |
| TraesCS4D01G002700.2 | Wheat | mitochondrion, plastid | 32.37 | 24.76 |
| TraesCS4D01G003200.1 | Wheat | golgi | 31.95 | 24.37 |
| TraesCS4D01G003400.2 | Wheat | mitochondrion | 30.29 | 22.67 |
| TraesCS5D01G287000.1 | Wheat | plastid | 29.05 | 21.74 |
| TraesCS4D01G093500.1 | Wheat | mitochondrion | 27.39 | 20.43 |
| TraesCS1D01G210800.1 | Wheat | plastid | 26.14 | 19.81 |
| TraesCS7D01G055800.1 | Wheat | mitochondrion, plastid | 26.56 | 17.68 |
| TraesCS4D01G351800.1 | Wheat | mitochondrion | 23.65 | 17.07 |
| TraesCS3D01G077500.2 | Wheat | cytosol, plastid | 24.07 | 16.57 |
| TraesCS4D01G351700.1 | Wheat | mitochondrion, plastid | 23.65 | 16.19 |
| TraesCS6D01G051500.1 | Wheat | cytosol | 25.31 | 14.91 |
| HORVU2Hr1G020490.1 | Barley | plastid | 5.81 | 8.64 |
| HORVU4Hr1G073090.1 | Barley | plastid | 4.98 | 8.57 |
| HORVU2Hr1G006120.3 | Barley | plastid | 2.07 | 4.1 |
| HORVU5Hr1G104070.1 | Barley | plastid | 1.24 | 2.34 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G563700.1 | EnsemblPlantsGene:TraesCS2D01G563700 | Gene3D:3.40.50.720 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016630 | GO:GO:0055114 | InterPro:NAD(P)-bd_dom_sf | InterPro:Prochl_reduct | InterPro:SDR_fam |
| KEGG:00860+1.3.1.33 | PANTHER:PTHR44419 | PANTHER:PTHR44419:SF2 | PFAM:PF00106 | SUPFAM:SSF51735 | TIGRFAMs:TIGR01289 |
| MapMan:7.12.6.5.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr2D:+:634824438..634825566
Molecular Weight (calculated)
26834.3 Da
IEP (calculated)
8.478
GRAVY (calculated)
-0.151
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MLFTLDLASL DSVRQFVDAF RRADMPLDVL VCNAAIYRPT ARTPTFTADG HEMSVGVNHL SHFLLARLLM EDLQKSDYPS RRMVIVGSIT GNGNTQAGNV
101: PPKASLGDLR GLAGGLSGAK VCNMLTMQEF HQRYHKETGI TFSSLYPGCI ATTGLFREHI PLFRTLFPPF QKFITMRFVW EAESGKRLAQ VVAEPSLTKS
201: GVYWSWNKDS ASFENQLSQE ASDPEKARKV WELSEKLVGL A
101: PPKASLGDLR GLAGGLSGAK VCNMLTMQEF HQRYHKETGI TFSSLYPGCI ATTGLFREHI PLFRTLFPPF QKFITMRFVW EAESGKRLAQ VVAEPSLTKS
201: GVYWSWNKDS ASFENQLSQE ASDPEKARKV WELSEKLVGL A
001: MALQAAYSLL PSTISIQKEG KFNASLKETT FTGSSFSNHL RAEKISTLLT IKEQRRQKPR FSTGIRAQTV TATPPANEAS PEQKKTERKG TAVITGASSG
101: LGLATAKALA DTGKWHVIMA CRNFLKAEKA ARSVGMSKED YTVMHLDLAS LESVKQFVEN FRRTEQPLDV LVCNAAVYQP TAKEPSFTAE GFEISVGTNH
201: LGHFLLSRLL LDDLKKSDYP SKRMIIVGSI TGNTNTLAGN VPPKANLGDL RGLASGLNGQ NSSMIDGGEF DGAKAYKDSK VCNMLTMQEL HRRYHEETGV
301: TFASLYPGCI ATTGLFREHI PLFRLLFPPF QKYITKGYVS EEEAGKRLAQ VVSDPSLGKS GVYWSWNNNS SSFENQLSKE ASDAEKAKKL WEVSEKLVGL
401: A
101: LGLATAKALA DTGKWHVIMA CRNFLKAEKA ARSVGMSKED YTVMHLDLAS LESVKQFVEN FRRTEQPLDV LVCNAAVYQP TAKEPSFTAE GFEISVGTNH
201: LGHFLLSRLL LDDLKKSDYP SKRMIIVGSI TGNTNTLAGN VPPKANLGDL RGLASGLNGQ NSSMIDGGEF DGAKAYKDSK VCNMLTMQEL HRRYHEETGV
301: TFASLYPGCI ATTGLFREHI PLFRLLFPPF QKYITKGYVS EEEAGKRLAQ VVSDPSLGKS GVYWSWNNNS SSFENQLSKE ASDAEKAKKL WEVSEKLVGL
401: A
Arabidopsis Description
PORCProtochlorophyllide reductase C, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O48741]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.