Factsheet for TraesCS2B01G593000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G171000.1
TraesCS1A01G340600.1
TraesCS1B01G186300.1
TraesCS1D01G168700.2
TraesCS1D01G342600.1
TraesCS2A01G346700.1
TraesCS2A01G368500.1
TraesCS2A01G590600.1
TraesCS2B01G365000.1
TraesCS2B01G385700.2
TraesCS2B01G593000.1
TraesCS2D01G345400.1
TraesCS2D01G365300.2
TraesCS2D01G563600.1
TraesCS2D01G563700.1
TraesCS3A01G274800.1
TraesCS3A01G313000.1
TraesCS3B01G158900.1
TraesCS3B01G308400.1
TraesCS3D01G141300.1
TraesCS3D01G274500.1
TraesCS5A01G095100.1
TraesCS5B01G101300.1
TraesCS5D01G107800.1
TraesCS6A01G237600.1
TraesCS6B01G266100.1
TraesCS6D01G220300.1
TraesCS7A01G300700.1
TraesCS7D01G296400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03630.1	TraesCS1A01G171000.1	AT1G03630.1	21798944
AT1G03630.1	TraesCS1B01G186300.1	AT1G03630.1	21798944
AT1G03630.1	TraesCS1D01G168700.2	AT1G03630.1	21798944
AT1G03630.1	TraesCS2A01G590600.1	AT1G03630.1	21798944
AT1G03630.1	TraesCS2B01G593000.1	AT1G03630.1	21798944
AT1G03630.1	TraesCS2D01G563600.1	AT1G03630.1	21798944
AT1G03630.1	TraesCS2D01G563700.1	AT1G03630.1	21798944
AT1G03630.1	TraesCS2A01G346700.1	AT1G27300.1	21798944
AT1G03630.1	TraesCS2B01G365000.1	AT1G27300.1	21798944
AT1G03630.1	TraesCS2D01G345400.1	AT1G27300.1	21798944
AT1G03630.1	TraesCS1A01G340600.1	AT3G16310.1	21798944
AT1G03630.1	TraesCS1D01G342600.1	AT3G16310.1	21798944
AT1G03630.1	TraesCS3A01G274800.1	AT3G16310.1	21798944
AT1G03630.1	TraesCS3A01G313000.1	AT3G16310.1	21798944
AT1G03630.1	TraesCS3B01G158900.1	AT3G16310.1	21798944
AT1G03630.1	TraesCS3B01G308400.1	AT3G16310.1	21798944
AT1G03630.1	TraesCS3D01G141300.1	AT3G16310.1	21798944
AT1G03630.1	TraesCS3D01G274500.1	AT3G16310.1	21798944
AT1G03630.1	TraesCS2A01G368500.1	AT3G60600.1	21798944
AT1G03630.1	TraesCS2B01G385700.2	AT3G60600.1	21798944
AT1G03630.1	TraesCS2D01G365300.2	AT3G60600.1	21798944
AT1G03630.1	TraesCS6A01G237600.1	AT3G60600.1	21798944
AT1G03630.1	TraesCS6B01G266100.1	AT3G60600.1	21798944
AT1G03630.1	TraesCS6D01G220300.1	AT3G60600.1	21798944
AT1G03630.1	TraesCS7A01G300700.1	AT3G60600.1	21798944
AT1G03630.1	TraesCS7D01G296400.1	AT3G60600.1	21798944
AT1G03630.1	TraesCS1A01G171000.1	AT4G27440.1	21798944
AT1G03630.1	TraesCS1B01G186300.1	AT4G27440.1	21798944
AT1G03630.1	TraesCS1D01G168700.2	AT4G27440.1	21798944
AT1G03630.1	TraesCS2A01G590600.1	AT4G27440.1	21798944
AT1G03630.1	TraesCS2B01G593000.1	AT4G27440.1	21798944
AT1G03630.1	TraesCS2D01G563600.1	AT4G27440.1	21798944
AT1G03630.1	TraesCS2D01G563700.1	AT4G27440.1	21798944
AT1G03630.1	TraesCS5A01G095100.1	AT5G11980.1	21798944
AT1G03630.1	TraesCS5B01G101300.1	AT5G11980.1	21798944
AT1G03630.1	TraesCS5D01G107800.1	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G590600.1	Wheat	plastid	98.97	98.97
TraesCS2D01G563600.1	Wheat	golgi, plastid	98.2	98.2
TraesCS2D01G563700.1	Wheat	cytosol	58.51	94.19
HORVU2Hr1G006120.3	Barley	plastid	28.87	91.8
HORVU4Hr1G073090.1	Barley	plastid	32.99	91.43
HORVU5Hr1G104070.1	Barley	plastid	29.9	90.62
Zm00001d001820_P001	Maize	plastid	85.05	85.27
EES11656	Sorghum	plastid	84.28	84.94
Os04t0678700-01	Rice	plastid	84.02	84.24
HORVU2Hr1G020490.1	Barley	plastid	33.76	80.86
GSMUA_Achr3P14270_001	Banana	plastid	76.55	76.74
HORVU2Hr1G119050.2	Barley	mitochondrion	71.13	73.6
Solyc12g013710.1.1	Tomato	extracellular, nucleus, plastid	75.0	73.3
KRH27209	Soybean	nucleus, plastid	75.26	73.18
CDY29311	Canola	plastid	74.74	73.05
CDX89249	Canola	plastid	74.74	73.05
PGSC0003DMT400039734	Potato	plastid	74.74	73.05
GSMUA_Achr7P04280_001	Banana	plastid	74.74	72.86
VIT_19s0014g03160.t01	Wine grape	plastid	74.23	72.73
Bra026349.1-P	Field mustard	plastid	72.68	72.68
Solyc10g006900.2.1	Tomato	plastid	73.97	72.66
Bra019049.1-P	Field mustard	plastid	74.48	72.61
KRH55334	Soybean	plastid	74.48	72.43
TraesCS1B01G186300.1	Wheat	plastid	73.71	72.41
PGSC0003DMT400064369	Potato	plastid	73.45	71.61
VIT_12s0059g00270.t01	Wine grape	plastid	73.45	71.43
AT5G54190.1	Thale cress	plastid	74.23	71.11
Bra003004.1-P	Field mustard	plastid	73.45	70.72
AT4G27440.1	Thale cress	plastid	72.94	70.57
CDY14325	Canola	plastid	73.45	70.54
CDX89877	Canola	plastid	71.91	69.75
Bra033415.1-P	Field mustard	plastid	71.65	69.5
KRH26074	Soybean	plastid	61.08	69.3
CDY18175	Canola	plastid	71.39	69.25
CDY51384	Canola	plastid	70.88	69.1
CDY15470	Canola	plastid	70.88	69.1
AT1G03630.1	Thale cress	plastid	71.39	69.08
Bra030540.1-P	Field mustard	plastid	70.62	68.84
PGSC0003DMT400047264	Potato	plastid	70.36	68.59
CDX98171	Canola	plastid	61.34	68.19
Solyc07g054210.2.1	Tomato	plastid	70.1	68.17
CDY18309	Canola	plastid	61.08	67.91
CDY29840	Canola	plastid	73.97	45.34
CDX92832	Canola	plastid	74.23	45.21
TraesCS4B01G002900.1	Wheat	golgi	29.38	36.08
TraesCS4B01G003400.1	Wheat	plastid	28.61	35.24
TraesCS3B01G220800.1	Wheat	mitochondrion, plastid	10.05	33.91
TraesCS5B01G461100.1	Wheat	mitochondrion, plastid	10.05	33.91
TraesCS5B01G279400.1	Wheat	plastid	26.55	31.99
TraesCS1B01G221200.1	Wheat	cytosol	25.77	31.75
TraesCS3B01G091800.3	Wheat	cytosol	25.77	31.25
TraesCS4B01G097100.1	Wheat	mitochondrion	23.97	28.79
TraesCS4B01G358400.1	Wheat	mitochondrion	22.94	26.73
TraesCS4B01G358200.1	Wheat	mitochondrion, plastid	22.94	26.73
TraesCS4B01G358300.1	Wheat	plastid	20.88	25.96
TraesCS4B01G358500.1	Wheat	mitochondrion	22.94	25.87
TraesCS6B01G060600.1	Wheat	cytosol	23.71	22.38

Protein Annotations

EnsemblPlants:TraesCS2B01G593000.1	EnsemblPlantsGene:TraesCS2B01G593000	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016630	GO:GO:0055114	InterPro:NAD(P)-bd_dom_sf	InterPro:Prochl_reduct	InterPro:SDR_fam
KEGG:00860+1.3.1.33	PANTHER:PTHR44419	PANTHER:PTHR44419:SF2	PFAM:PF00106	PRINTS:PR00081	SEG:seg
SUPFAM:SSF51735	TIGR:cd09810	TIGRFAMs:TIGR01289	MapMan:7.12.6.5.1	:	:

Description

No Description!

Coordinates

chr2B:+:777828926..777830183

Molecular Weight (calculated)

41154.5 Da

IEP (calculated)

9.940

GRAVY (calculated)

-0.056

Length

388 amino acids

Sequence
(BLAST)

001: MALQLLPSTL SVPKKGSSMG AVAVKDTAAF LGVSSKAKKA SLAVRTQVAT APSSVTTSPG SAVAKPGGKK TLRQGVVVIT GASSGLGLAA AKALAETGKW
101: HVVMACRDFL KASKAAKAAG MADGSYTVMH LDLASLDSVR QFVDAFRRAE MPLDVLVCNA AIYRPTARTP TFTADGHEMS VGVNHLGHFL LARLLMEDLQ
201: KSDYPSRRMV IVGSITGNSN TLAGNVPPKA SLGDLRGLAG GLSGASGSAM IDGDESFDGA KAYKDSKVCN MLTMQEFHRR YHEETGITFS SLYPGCIATT
301: GLFREHIPLF RTLFPPFQKF VTKGFVSEAE SGKRLAQVVA EPSLTKSGVY WSWNKDSASF ENQLSQEASD PEKARKVWEL SEKLVGLA

Best Arabidopsis Sequence Match ( AT1G03630.1 )
(BLAST)

001: MALQAAYSLL PSTISIQKEG KFNASLKETT FTGSSFSNHL RAEKISTLLT IKEQRRQKPR FSTGIRAQTV TATPPANEAS PEQKKTERKG TAVITGASSG
101: LGLATAKALA DTGKWHVIMA CRNFLKAEKA ARSVGMSKED YTVMHLDLAS LESVKQFVEN FRRTEQPLDV LVCNAAVYQP TAKEPSFTAE GFEISVGTNH
201: LGHFLLSRLL LDDLKKSDYP SKRMIIVGSI TGNTNTLAGN VPPKANLGDL RGLASGLNGQ NSSMIDGGEF DGAKAYKDSK VCNMLTMQEL HRRYHEETGV
301: TFASLYPGCI ATTGLFREHI PLFRLLFPPF QKYITKGYVS EEEAGKRLAQ VVSDPSLGKS GVYWSWNNNS SSFENQLSKE ASDAEKAKKL WEVSEKLVGL
401: A

Arabidopsis Description

PORCProtochlorophyllide reductase C, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O48741]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.