Factsheet for TraesCS4B01G003400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G002700.2	Wheat	mitochondrion, plastid	95.24	95.24
TraesCS4B01G002900.1	Wheat	golgi	94.6	94.3
TraesCS4A01G311400.1	Wheat	mitochondrion, plastid	94.29	93.99
TraesCS5B01G461100.1	Wheat	mitochondrion, plastid	32.06	87.83
TraesCS3B01G220800.1	Wheat	mitochondrion, plastid	31.75	86.96
Os09t0570300-01	Rice	plasma membrane	82.86	82.59
EER96376	Sorghum	mitochondrion, plastid	81.27	81.01
GSMUA_AchrUn_...	Banana	cytosol	71.75	72.2
Zm00001d019754_P001	Maize	mitochondrion, plastid	78.1	69.69
PGSC0003DMT400040845	Potato	cytosol	66.35	66.77
VIT_02s0025g03380.t01	Wine grape	cytosol	66.35	66.35
KRH59919	Soybean	cytosol, plastid	66.35	66.35
KRG91556	Soybean	cytosol	65.71	66.13
Solyc03g025410.2.1	Tomato	nucleus	65.08	65.5
PGSC0003DMT400040848	Potato	plastid	65.08	65.5
PGSC0003DMT400032133	Potato	cytosol	65.4	65.4
VIT_16s0050g00760.t01	Wine grape	plastid	64.76	65.18
KRH41194	Soybean	cytosol, plastid	64.76	64.76
Solyc08g081200.2.1	Tomato	cytosol	64.44	64.44
CDX86777	Canola	cytosol	64.76	64.35
Bra035220.1-P	Field mustard	cytosol	64.76	64.35
AT4G11410.1	Thale cress	cytosol, mitochondrion	64.44	64.04
CDY13264	Canola	cytosol	64.44	64.04
Solyc03g025370.2.1	Tomato	cytosol, nucleus, plastid	63.49	63.9
KRH08894	Soybean	plastid	43.81	63.59
PGSC0003DMT400040847	Potato	cytosol	62.54	62.94
Solyc03g025390.2.1	Tomato	cytosol	61.59	61.98
KRH08897	Soybean	cytosol, mitochondrion	61.59	61.78
CDY10884	Canola	plastid	62.54	61.18
KRH38419	Soybean	plastid	61.9	61.13
KRH38432	Soybean	cytosol	60.95	60.19
Solyc03g025400.2.1	Tomato	cytosol	60.32	60.13
Bra013690.1-P	Field mustard	plastid	61.59	59.88
Bra020819.1-P	Field mustard	cytosol, plastid	60.95	59.63
CDX76338	Canola	cytosol, plastid	60.95	59.63
KRH08898	Soybean	cytosol	59.68	59.49
AT4G23430.2	Thale cress	plastid	60.63	59.32
PGSC0003DMT400014810	Potato	mitochondrion	46.03	59.18
PGSC0003DMT400085601	Potato	plastid	30.16	59.01
KRH35271	Soybean	plastid	64.76	58.45
Solyc08g008060.1.1	Tomato	cytosol	58.41	58.41
KRH38433	Soybean	cytosol	59.05	58.31
KRH35274	Soybean	cytosol, mitochondrion, plastid	65.71	57.66
CDY69917	Canola	endoplasmic reticulum	55.56	57.38
KRH38426	Soybean	cytosol	59.37	57.36
AT4G23420.3	Thale cress	plastid	60.32	57.06
TraesCS1B01G221200.1	Wheat	cytosol	56.51	56.51
KRH38431	Soybean	plastid	57.46	56.04
KRG91557	Soybean	cytosol	36.51	55.29
TraesCS3B01G091800.3	Wheat	cytosol	54.92	54.06
CDY44096	Canola	mitochondrion, plastid	61.9	54.02
TraesCS4B01G097100.1	Wheat	mitochondrion	55.24	53.87
TraesCS5B01G279400.1	Wheat	plastid	54.6	53.42
KRH08895	Soybean	cytosol	60.0	49.48
TraesCS4B01G358200.1	Wheat	mitochondrion, plastid	47.3	44.74
TraesCS4B01G358400.1	Wheat	mitochondrion	47.3	44.74
TraesCS4B01G358500.1	Wheat	mitochondrion	46.98	43.02
TraesCS4B01G358300.1	Wheat	plastid	39.37	39.74
VIT_16s0050g00750.t01	Wine grape	plastid	66.67	33.6
TraesCS2B01G593000.1	Wheat	plastid	35.24	28.61
TraesCS1B01G186300.1	Wheat	plastid	33.33	26.58
TraesCS6B01G060600.1	Wheat	cytosol	31.43	24.09

Protein Annotations

EnsemblPlants:TraesCS4B01G003400.1	EnsemblPlantsGene:TraesCS4B01G003400	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	PANTHER:PTHR24320
PANTHER:PTHR24320:SF146	PFAM:PF00106	PRINTS:PR00080	PRINTS:PR00081	SEG:seg	SUPFAM:SSF51735
TIGR:cd05327	MapMan:23.1.3.5.1	:	:	:	:

Description

No Description!

Coordinates

chr4B:-:1981455..1985539

Molecular Weight (calculated)

33831.4 Da

IEP (calculated)

8.465

GRAVY (calculated)

-0.030

Length

315 amino acids

Sequence
(BLAST)

001: MLPWIFSRKG ASGFSWASTA DHVTAGISAA GLTAIVTGAS SGIGAETARV LAARGAHVVM AARNLAAAET VRQAVLADTP GASLELMELD LSSLASVRKF
101: AADFAARGLP LNILVNNAGV MATPFSLSKD GIEMQFATNH VGHFLLTHLL LETMKKTSHE SNVEGRIVNV SSEGHRFAYK EGIRFAKLND EEEYSTIAAY
201: GQSKLANILH ANELARRFKE EGVNITANSL HPGSIITNLL RHHSIIDVLH RTLGKLVLKN ARQGAATQCY VALHPDAKGV SGKYWSDSNL YEPSDKAKDA
301: ELGKKLWDYT LDLVA

Best Arabidopsis Sequence Match ( AT4G23430.2 )
(BLAST)

001: MWFFGSKGAS GFSSRSTAEE VTHGVDGTGL TAIVTGASSG IGVETARVLS LRGVHVVMAV RNTDSGAKVK EDIVKQVPGA KLDVMELDLS SMQSVRKFAS
101: EYKSTGLPLN LLINNAGIMA CPFMLSKDNI ELQFATNHLG HFLLTKLLLD TMKSTSRESK REGRIVNLSS EAHRFSYPEG VRFDKINDKS SYSSMRAYGQ
201: SKLCNVLHAN ELTKQLKEDG VNITANSLHP GAIMTNLGRY FNPYLAVAVG AVAKYILKSV PQGAATTCYV ALNPQVAGVS GEYFQDSNIA KPLPLVKDTE
301: LAKKVWDFST KLTDSQSGES SS

Arabidopsis Description

TIC32Short-chain dehydrogenase TIC 32, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:A2RVM0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.