Factsheet for TraesCS4B01G002900.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G003400.1	Wheat	plastid	94.3	94.6
TraesCS4D01G003200.1	Wheat	golgi	92.72	92.72
TraesCS5B01G461100.1	Wheat	mitochondrion, plastid	33.23	91.3
TraesCS3B01G220800.1	Wheat	mitochondrion, plastid	32.91	90.43
TraesCS4D01G003400.2	Wheat	mitochondrion	86.71	85.09
Os09t0570300-01	Rice	plasma membrane	81.65	81.65
EER96376	Sorghum	mitochondrion, plastid	81.01	81.01
GSMUA_AchrUn_...	Banana	cytosol	72.15	72.84
Zm00001d019754_P001	Maize	mitochondrion, plastid	76.9	68.84
PGSC0003DMT400040845	Potato	cytosol	67.41	68.05
VIT_02s0025g03380.t01	Wine grape	cytosol	67.72	67.94
KRH59919	Soybean	cytosol, plastid	67.09	67.3
Solyc03g025410.2.1	Tomato	nucleus	66.46	67.09
KRG91556	Soybean	cytosol	66.46	67.09
PGSC0003DMT400040848	Potato	plastid	66.14	66.77
VIT_16s0050g00760.t01	Wine grape	plastid	66.14	66.77
KRH41194	Soybean	cytosol, plastid	65.82	66.03
Solyc03g025370.2.1	Tomato	cytosol, nucleus, plastid	64.87	65.5
PGSC0003DMT400032133	Potato	cytosol	64.87	65.08
KRH08894	Soybean	plastid	44.62	64.98
Solyc08g081200.2.1	Tomato	cytosol	64.56	64.76
CDX86777	Canola	cytosol	64.87	64.67
AT4G11410.1	Thale cress	cytosol, mitochondrion	64.87	64.67
Bra035220.1-P	Field mustard	cytosol	64.87	64.67
PGSC0003DMT400040847	Potato	cytosol	63.92	64.54
CDY13264	Canola	cytosol	64.56	64.35
Solyc03g025390.2.1	Tomato	cytosol	62.97	63.58
KRH08897	Soybean	cytosol, mitochondrion	62.97	63.38
Solyc03g025400.2.1	Tomato	cytosol	62.03	62.03
CDY10884	Canola	plastid	62.97	61.8
PGSC0003DMT400085601	Potato	plastid	31.33	61.49
KRH38419	Soybean	plastid	62.03	61.44
KRH38432	Soybean	cytosol	61.39	60.81
CDX76338	Canola	cytosol, plastid	61.71	60.56
Bra020819.1-P	Field mustard	cytosol, plastid	61.71	60.56
Bra013690.1-P	Field mustard	plastid	62.03	60.49
AT4G23430.2	Thale cress	plastid	61.39	60.25
KRH08898	Soybean	cytosol	60.13	60.13
KRH35271	Soybean	plastid	65.82	59.6
KRH38433	Soybean	cytosol	60.13	59.56
PGSC0003DMT400014810	Potato	mitochondrion	45.89	59.18
Solyc08g008060.1.1	Tomato	cytosol	58.54	58.73
CDY69917	Canola	endoplasmic reticulum	56.33	58.36
KRH38426	Soybean	cytosol	60.13	58.28
KRH35274	Soybean	cytosol, mitochondrion, plastid	66.14	58.22
TraesCS1B01G221200.1	Wheat	cytosol	57.28	57.46
AT4G23420.3	Thale cress	plastid	60.44	57.36
KRH38431	Soybean	plastid	58.54	57.28
KRG91557	Soybean	cytosol	36.71	55.77
CDY44096	Canola	mitochondrion, plastid	62.34	54.57
TraesCS4B01G097100.1	Wheat	mitochondrion	55.7	54.49
TraesCS3B01G091800.3	Wheat	cytosol	55.06	54.38
TraesCS5B01G279400.1	Wheat	plastid	55.06	54.04
KRH08895	Soybean	cytosol	61.08	50.52
TraesCS4B01G358200.1	Wheat	mitochondrion, plastid	46.52	44.14
TraesCS4B01G358400.1	Wheat	mitochondrion	46.52	44.14
TraesCS4B01G358500.1	Wheat	mitochondrion	46.2	42.44
TraesCS4B01G358300.1	Wheat	plastid	38.61	39.1
VIT_16s0050g00750.t01	Wine grape	plastid	67.72	34.24
TraesCS2B01G593000.1	Wheat	plastid	36.08	29.38
TraesCS1B01G186300.1	Wheat	plastid	33.23	26.58
TraesCS6B01G060600.1	Wheat	cytosol	31.33	24.09

Protein Annotations

EnsemblPlants:TraesCS4B01G002900.1	EnsemblPlantsGene:TraesCS4B01G002900	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	PANTHER:PTHR24320
PANTHER:PTHR24320:SF146	PFAM:PF00106	PRINTS:PR00080	PRINTS:PR00081	SEG:seg	SUPFAM:SSF51735
TIGR:cd05327	MapMan:23.1.3.5.1	:	:	:	:

Description

No Description!

Coordinates

chr4B:+:1768702..1772343

Molecular Weight (calculated)

33850.4 Da

IEP (calculated)

7.781

GRAVY (calculated)

-0.008

Length

316 amino acids

Sequence
(BLAST)

001: MLPWIFSRKG ASGFSWASTA DQVTAGISAS GLTAIVTGAS SGIGAETARV LAARGAHVVM AVRNLAAADA VRQAVLAESP AASLELMELD LSSLASVRKF
101: ADDFAATGLP LNILVNNAGV MATPFTLSKD GIEMQFATNH VGHFLLTNLL LETMKKTSRE SNVEGRIVNV SSEGHRFAYK EGIRFAKLND EEEYSTIAAY
201: GQSKLANILH ANELARRFKE EGVNITANSL HPGAIITNLL RHHSIIDALH RTLGKLVLKN AKQGAATQCY VALHPDAKGV SGKYWCDSNL YEPSDKAKDA
301: ELGKKLWDYT LDLVAA

Best Arabidopsis Sequence Match ( AT4G11410.1 )
(BLAST)

001: MWPFWWKGAS GFSARSTAEE VTHGIDGTGL TAIVTGASSG IGEETTRVLA LRGVHVVMAV RNTDSGNQVR DKILKEIPQA KIDVMKLDLS SMASVRSFAS
101: EYQSLDLPLN LLINNAGIMA CPFLLSSDNI ELQFATNHLG HFLLTNLLLE RMKKTASESN REGRIVIVSS EGHRFAYREG VQFDKINDEA RYNTLQAYGQ
201: SKLGNILHAT ELARLFKEQG VNITANSLHP GSIMTNLLRY HSFINTIGNA VGKYVLKSIP QGAATTCYAA LHPQAKGVSG EYLMDNNISD PNSQGKDKDL
301: AKKLWEFSLR LTGEEES

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LDY7]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.