Factsheet for Bra035220.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86777	Canola	cytosol	100.0	100.0
AT4G11410.1	Thale cress	cytosol, mitochondrion	91.48	91.48
KRH59919	Soybean	cytosol, plastid	73.82	74.29
KRH41194	Soybean	cytosol, plastid	72.87	73.33
VIT_02s0025g03380.t01	Wine grape	cytosol	71.92	72.38
PGSC0003DMT400032133	Potato	cytosol	70.03	70.48
Solyc08g081200.2.1	Tomato	cytosol	69.4	69.84
GSMUA_AchrUn_...	Banana	cytosol	68.14	69.01
Bra013690.1-P	Field mustard	plastid	70.35	68.83
EER96376	Sorghum	mitochondrion, plastid	66.25	66.46
Bra020819.1-P	Field mustard	cytosol, plastid	66.88	65.84
Os09t0570300-01	Rice	plasma membrane	65.3	65.51
TraesCS4B01G002900.1	Wheat	golgi	64.67	64.87
TraesCS4D01G003200.1	Wheat	golgi	64.67	64.87
TraesCS4B01G003400.1	Wheat	plastid	64.35	64.76
Solyc08g008060.1.1	Tomato	cytosol	64.35	64.76
TraesCS4D01G002700.2	Wheat	mitochondrion, plastid	64.35	64.76
TraesCS4A01G311400.1	Wheat	mitochondrion, plastid	64.04	64.24
TraesCS4D01G003400.2	Wheat	mitochondrion	64.04	63.04
GSMUA_Achr2P18620_001	Banana	plastid	62.78	62.97
PGSC0003DMT400014810	Potato	mitochondrion	48.27	62.45
Zm00001d047150_P003	Maize	plastid	60.57	60.95
OQU92195	Sorghum	cytosol	59.94	60.32
EER91987	Sorghum	plastid	58.68	59.42
OQU92191	Sorghum	plastid	57.73	58.47
Zm00001d019754_P001	Maize	mitochondrion, plastid	64.35	57.79
TraesCS1B01G221200.1	Wheat	cytosol	57.1	57.46
TraesCS5B01G461100.1	Wheat	mitochondrion, plastid	20.5	56.52
TraesCS1A01G207500.1	Wheat	cytosol	56.15	56.51
Os10t0547900-01	Rice	cytosol	55.84	56.37
Zm00001d029840_P003	Maize	plastid	58.99	55.99
TraesCS1D01G210800.1	Wheat	plastid	56.15	55.97
Os10t0548000-02	Rice	cytosol, peroxisome, plastid	56.15	55.8
Os04t0291100-01	Rice	mitochondrion	55.2	55.73
TraesCS4A01G492800.1	Wheat	mitochondrion, plastid	20.19	55.65
Bra005188.1-P	Field mustard	cytosol	55.2	55.2
Bra017180.1-P	Field mustard	cytosol	55.52	54.83
TraesCS3B01G220800.1	Wheat	mitochondrion, plastid	19.87	54.78
Zm00001d025129_P001	Maize	mitochondrion	38.8	52.34
Bra005729.1-P	Field mustard	mitochondrion	54.57	52.27
Bra009580.1-P	Field mustard	mitochondrion	53.94	51.66
Bra019248.1-P	Field mustard	cytosol	45.11	43.07
Bra013757.1-P	Field mustard	cytosol	43.53	41.57
Bra027706.1-P	Field mustard	plastid	44.16	40.46
Bra027725.1-P	Field mustard	plastid	43.85	39.27
Bra037939.1-P	Field mustard	cytosol	43.85	27.97
Bra026349.1-P	Field mustard	plastid	32.81	26.8
Bra019049.1-P	Field mustard	plastid	33.12	26.38
Bra026308.1-P	Field mustard	cytosol, nucleus, peroxisome	30.6	26.01
Bra030540.1-P	Field mustard	plastid	32.49	25.88
Bra033415.1-P	Field mustard	plastid	32.49	25.75
Bra003004.1-P	Field mustard	plastid	31.86	25.06
Bra029096.1-P	Field mustard	nucleus	29.34	24.6
Bra019028.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	29.02	22.66
Bra022628.1-P	Field mustard	cytosol, mitochondrion	27.76	21.95
Bra027724.1-P	Field mustard	cytosol, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:Bra035220.1	EnsemblPlants:Bra035220.1-P	EnsemblPlantsGene:Bra035220	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam
PANTHER:PTHR24320	PANTHER:PTHR24320:SF146	PFAM:PF00106	PRINTS:PR00081	SEG:seg	SUPFAM:SSF51735
UniParc:UPI000254693D	UniProt:M4F2C2	MapMan:23.1.3.5.1	:	:	:

Description

AT4G11410 (E=6e-157) | short-chain dehydrogenase/reductase (SDR) family protein

Coordinates

chrA08:+:9243594..9245349

Molecular Weight (calculated)

34586.2 Da

IEP (calculated)

6.859

GRAVY (calculated)

-0.162

Length

317 amino acids

Sequence
(BLAST)

001: MWPFWWKGAS GFSAHSTAEQ VTHGIDGTAL TAIITGASSG IGEETTRVLA LRGVHVVMAV RNTDSGNQVR AKILKDTPEA KIDVMKLDLS SMASVRSFAS
101: EFKSLDLPLN LLINNAGIMA CPYTLSSDNI ELQFATNHLG HFLLTNLLLD TMKKTANESN TEGRIVILSS EGHRYAYREG IRFDKINDEA SYNTLQAYGQ
201: SKLCNILHAT ELARLFKEQG VNITANSLHP GSIMTNLLRY HSFINTLGNA VGKYVLKSIP QGAATTCYAA LHPQAKGVSG EYLMDNNISS PNSQGKDTDL
301: AKKLWEFSLS LTGEEEL

Best Arabidopsis Sequence Match ( AT4G11410.1 )
(BLAST)

001: MWPFWWKGAS GFSARSTAEE VTHGIDGTGL TAIVTGASSG IGEETTRVLA LRGVHVVMAV RNTDSGNQVR DKILKEIPQA KIDVMKLDLS SMASVRSFAS
101: EYQSLDLPLN LLINNAGIMA CPFLLSSDNI ELQFATNHLG HFLLTNLLLE RMKKTASESN REGRIVIVSS EGHRFAYREG VQFDKINDEA RYNTLQAYGQ
201: SKLGNILHAT ELARLFKEQG VNITANSLHP GSIMTNLLRY HSFINTIGNA VGKYVLKSIP QGAATTCYAA LHPQAKGVSG EYLMDNNISD PNSQGKDKDL
301: AKKLWEFSLR LTGEEES

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LDY7]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.