Factsheet for Bra009580.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40365	Canola	mitochondrion	99.7	99.7
CDY10440	Canola	plastid	94.86	96.62
AT5G02540.1	Thale cress	mitochondrion	94.26	94.26
Bra005729.1-P	Field mustard	mitochondrion	92.14	92.14
CDY10441	Canola	cytosol, extracellular, mitochondrion, plastid	37.16	89.78
Bra017180.1-P	Field mustard	cytosol	69.79	71.96
VIT_08s0040g03400.t01	Wine grape	plastid	69.79	71.3
Solyc10g086390.1.1	Tomato	mitochondrion	69.49	71.21
Bra005188.1-P	Field mustard	cytosol	67.67	70.66
GSMUA_Achr8P20890_001	Banana	cytosol, mitochondrion, plastid	68.28	70.62
PGSC0003DMT400049292	Potato	mitochondrion	68.88	70.59
KRH19708	Soybean	nucleus	68.88	70.59
GSMUA_Achr11P...	Banana	cytosol	68.28	69.75
PGSC0003DMT400022813	Potato	mitochondrion	66.77	69.06
KRH32305	Soybean	plastid	67.37	69.04
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	66.77	68.85
GSMUA_Achr7P15240_001	Banana	plastid	67.37	68.83
KRG95813	Soybean	nucleus	66.77	68.42
KRH67540	Soybean	nucleus	66.77	68.42
Solyc09g010510.2.1	Tomato	cytosol, mitochondrion, plastid	65.26	67.5
Zm00001d039848_P002	Maize	cytosol, mitochondrion, plastid	64.65	66.88
EES02479	Sorghum	cytosol, plastid	64.35	66.56
Os01t0151700-01	Rice	cytosol	62.84	64.8
TraesCS5B01G279400.1	Wheat	plastid	62.54	64.29
TraesCS3B01G091800.3	Wheat	cytosol	61.93	64.06
TraesCS5D01G287000.1	Wheat	plastid	62.24	63.98
TraesCS5A01G280400.1	Wheat	plastid	61.63	63.35
TraesCS3A01G077400.2	Wheat	cytosol, plastid	60.73	57.43
HORVU3Hr1G013970.6	Barley	plastid	61.03	56.9
Bra013690.1-P	Field mustard	plastid	54.68	55.86
Bra020819.1-P	Field mustard	cytosol, plastid	53.78	55.28
Bra035220.1-P	Field mustard	cytosol	51.66	53.94
Zm00001d039397_P001	Maize	cytosol	39.27	53.5
HORVU5Hr1G075530.8	Barley	cytosol, nucleus, plastid	61.63	52.58
TraesCS3D01G077500.2	Wheat	cytosol, plastid	54.08	51.14
Bra019248.1-P	Field mustard	cytosol	48.64	48.49
Bra013757.1-P	Field mustard	cytosol	47.13	46.99
Bra027706.1-P	Field mustard	plastid	48.34	46.24
Bra027725.1-P	Field mustard	plastid	47.73	44.63
Bra037939.1-P	Field mustard	cytosol	46.53	30.99
Bra033415.1-P	Field mustard	plastid	31.12	25.75
Bra030540.1-P	Field mustard	plastid	30.51	25.38
Bra026349.1-P	Field mustard	plastid	29.61	25.26
Bra019049.1-P	Field mustard	plastid	30.21	25.13
Bra026308.1-P	Field mustard	cytosol, nucleus, peroxisome	27.79	24.66
Bra029096.1-P	Field mustard	nucleus	27.49	24.07
Bra003004.1-P	Field mustard	plastid	29.0	23.82
Bra019028.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	27.49	22.41
Bra022628.1-P	Field mustard	cytosol, mitochondrion	26.89	22.19
Bra027724.1-P	Field mustard	cytosol, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:Bra009580.1	EnsemblPlants:Bra009580.1-P	EnsemblPlantsGene:Bra009580	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam
PANTHER:PTHR24320	PANTHER:PTHR24320:SF81	PFAM:PF00106	PRINTS:PR00080	PRINTS:PR00081	SEG:seg
SUPFAM:SSF51735	UniParc:UPI0002547D0D	UniProt:M4CZD3	MapMan:35.1	:	:

Description

AT5G02540 (E=8e-173) | short-chain dehydrogenase/reductase (SDR) family protein

Coordinates

chrA10:-:17287425..17289902

Molecular Weight (calculated)

36403.8 Da

IEP (calculated)

8.830

GRAVY (calculated)

-0.051

Length

331 amino acids

Sequence
(BLAST)

001: MGIYSLITGR RGPSGFGSAS TAEEVTQGID ATHLTAIITG GTGGIGMETA RVMAKRGAHV VIGARNMGAA ENAKTEILRQ NANARVTLLH LDLSSFKSIK
101: AFVRDFHALH RPLNILINNA GVMFCPYQLS EDGIELQFAT NHIGHFLLTN LLLDTMKNTA KTSGVEGRIL NLSSIAHIYT YQEGIQFNSI NDICSYSDKK
201: AYGQSKLANI LHANELSRQL QEEGVNITVN SVHPGLILTN LFQHTAILMR FLKFFSFYLW KNIPQGAATT CYVALHPSLK EVTGKYFADC NEVTPSKLAR
301: DETLAQKLWD FSVKLINSVS KKNYLGFEDT S

Best Arabidopsis Sequence Match ( AT5G02540.1 )
(BLAST)

001: MGLYSLITGR RGPSGFGSAS TAEEVTQGID ATNLTAIITG GTGGIGMETA RVLSKRGAHV VIGARNMGAA ENAKTEILRQ NANARVTLLQ LDLSSIKSIK
101: AFVREFHALH LPLNLLINNA GVMFCPYQLS EDGIELQFAT NHIGHFLLTN LLLDTMKNTA KTSGVEGRIL NVSSVAHIYT YQEGIQFDSI NDICSYSDKR
201: AYGQSKLANI LHANELSRQL QEEGVNITAN SVHPGLILTN LFQHTALLMR FLKFFSFYLW KNIPQGAATT CYVALHPSVK GVTGKYFADC NEVTPSKLAR
301: DETLAQKLWD FSVKLINSVS KKNYLGFDDT T

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KCF2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.