CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, extracellular, cytosol

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 2
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88292	Canola	cytosol	56.2	49.04
CDY40365	Canola	mitochondrion	90.51	37.46
Bra009580.1-P	Field mustard	mitochondrion	89.78	37.16
CDY10440	Canola	plastid	86.86	36.62
AT5G02540.1	Thale cress	mitochondrion	84.67	35.05
CDY53896	Canola	plastid	49.63	34.0
CDY11217	Canola	mitochondrion	81.75	33.84
CDY72089	Canola	cytosol	45.26	30.85
CDY72311	Canola	cytosol	45.26	30.69
VIT_08s0040g03400.t01	Wine grape	plastid	62.77	26.54
CDY55418	Canola	cytosol	57.66	26.42
Solyc10g086390.1.1	Tomato	mitochondrion	61.31	26.01
CDY18436	Canola	cytosol	60.58	25.86
PGSC0003DMT400049292	Potato	mitochondrion	60.58	25.7
GSMUA_Achr11P...	Banana	cytosol	60.58	25.62
CDX81232	Canola	cytosol	59.12	25.23
PGSC0003DMT400022813	Potato	mitochondrion	58.39	25.0
GSMUA_Achr8P20890_001	Banana	cytosol, mitochondrion, plastid	58.39	25.0
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	58.39	24.92
TraesCS5B01G279400.1	Wheat	plastid	58.39	24.84
TraesCS5A01G280400.1	Wheat	plastid	57.66	24.53
TraesCS5D01G287000.1	Wheat	plastid	57.66	24.53
KRH19708	Soybean	nucleus	57.66	24.46
GSMUA_Achr7P15240_001	Banana	plastid	57.66	24.38
CDX74954	Canola	cytosol	56.93	24.38
CDY52816	Canola	cytosol	56.93	24.38
KRG95813	Soybean	nucleus	56.93	24.15
KRH32305	Soybean	plastid	56.93	24.15
EES02479	Sorghum	cytosol, plastid	56.2	24.06
CDY52817	Canola	cytosol	56.2	24.06
Zm00001d039848_P002	Maize	cytosol, mitochondrion, plastid	56.2	24.06
KRH67540	Soybean	nucleus	56.2	23.84
Solyc09g010510.2.1	Tomato	cytosol, mitochondrion, plastid	55.47	23.75
TraesCS3B01G091800.3	Wheat	cytosol	54.74	23.44
CDY70072	Canola	cytosol	28.47	23.35
Os01t0151700-01	Rice	cytosol	54.01	23.05
TraesCS3A01G077400.2	Wheat	cytosol, plastid	54.74	21.43
HORVU3Hr1G013970.6	Barley	plastid	55.47	21.41
TraesCS3D01G077500.2	Wheat	cytosol, plastid	53.28	20.86
HORVU5Hr1G075530.8	Barley	cytosol, nucleus, plastid	57.66	20.36
CDY53433	Canola	plastid	49.63	19.54
CDY10985	Canola	cytosol	45.99	18.98
CDX76323	Canola	cytosol	45.99	18.98
CDX76338	Canola	cytosol, plastid	44.53	18.94
CDX86777	Canola	cytosol	43.07	18.61
CDY13264	Canola	cytosol	43.07	18.61
CDY10884	Canola	plastid	43.07	18.32
CDY50440	Canola	mitochondrion	45.26	18.29
CDY44096	Canola	mitochondrion, plastid	43.8	16.62
CDY69917	Canola	endoplasmic reticulum	32.12	14.43
CDX92838	Canola	cytosol	29.93	12.81
CDX89228	Canola	cytosol, nucleus, peroxisome	31.39	11.53
CDY19025	Canola	cytosol	31.39	11.53
Zm00001d039397_P001	Maize	cytosol	18.98	10.7
CDX71585	Canola	mitochondrion	26.28	10.62
CDY29859	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	27.74	10.38
CDY37755	Canola	mitochondrion, plastid	45.99	10.11
CDX89249	Canola	plastid	28.47	9.82
CDY29311	Canola	plastid	28.47	9.82
CDX96191	Canola	mitochondrion	31.39	9.77
CDY18175	Canola	plastid	28.47	9.75
CDX89877	Canola	plastid	28.47	9.75
CDY14325	Canola	plastid	27.74	9.41
CDY27027	Canola	golgi, mitochondrion, nucleus	30.66	9.38
CDY15470	Canola	plastid	26.28	9.05
CDY51384	Canola	plastid	26.28	9.05
CDY47833	Canola	cytosol, nucleus, plastid	50.37	7.74
CDY08387	Canola	cytosol, nucleus, plastid	49.63	7.63
CDY18309	Canola	plastid	15.33	6.02
CDX98171	Canola	plastid	15.33	6.02
CDY29840	Canola	plastid	27.74	6.0
CDX92832	Canola	plastid	27.74	5.97
CDY38726	Canola	cytosol, golgi, plastid	32.12	5.29
CDY68648	Canola	cytosol	5.84	3.83
CDY64354	Canola	cytosol	4.38	2.64

Protein Annotations

EnsemblPlants:CDY10441	EnsemblPlantsGene:GSBRNA2T00032364001	Gene3D:3.40.50.720	GO:A0A078FAJ7	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	PANTHER:PTHR24320	PANTHER:PTHR24320:SF81	PFAM:PF00106
ProteinID:CDY10441	ProteinID:CDY10441.1	SEG:seg	SUPFAM:SSF51735	TMHMM:TMhelix	UniParc:UPI0004EEABD3
UniProt:A0A078FAJ7	MapMan:35.1	:	:	:	:

Description

BnaCnng03420DBnaCnng03420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FAJ7]

Coordinates

chrLK032003:-:513165..514087

Molecular Weight (calculated)

14552.8 Da

IEP (calculated)

10.115

GRAVY (calculated)

0.193

Length

137 amino acids

Sequence
(BLAST)

001: MGIYSLITGR RGPSGFGSAS TAEEVTQGID ATHLTAIITG GTGGIGMETA RVMAKRGAHV VIGARNMGAA ENAKTEILRQ NANARVTLLH LDLSSFKSIK
101: AFVRDFHALH LPLNILIFYI ILVLNGKCCT SESNKVN

Best Arabidopsis Sequence Match ( AT2G37540.1 )
(BLAST)

001: MGIYGVMTGK KGKSGFGSAS TAEDVTQAID ASHLTAIITG GTSGIGLEAA RVLAMRGAHV IIAARNPKAA NESKEMILQM NPNARVDYLQ IDVSSIKSVR
101: SFVDQFLALN VPLNILINNA GVMFCPFKLT EDGIESQFAT NHIGHFLLTN LLLDKMKSTA RESGVQGRIV NLSSIAHTYT YSEGIKFQGI NDPAGYSERR
201: AYGQSKLSNL LHSNALSRRL QEEGVNITIN SVHPGLVTTN LFRYSGFSMK VFRAMTFLFW KNIPQGAATT CYVALHPDLE GVTGKYFGDC NIVAPSKFAT
301: NNSLADKLWD FSVFLIDSIS K

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:O80924]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.