Factsheet for GSMUA_Achr8P20890_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

cytosol 3
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	85.62	85.36
GSMUA_Achr7P15240_001	Banana	plastid	83.44	82.41
GSMUA_Achr11P...	Banana	cytosol	80.0	79.01
EES02479	Sorghum	cytosol, plastid	75.94	75.94
Zm00001d039848_P002	Maize	cytosol, mitochondrion, plastid	75.62	75.62
Os01t0151700-01	Rice	cytosol	74.38	74.14
PGSC0003DMT400022813	Potato	mitochondrion	74.06	74.06
TraesCS3B01G091800.3	Wheat	cytosol	74.06	74.06
PGSC0003DMT400049292	Potato	mitochondrion	74.69	73.99
Solyc10g086390.1.1	Tomato	mitochondrion	74.69	73.99
VIT_08s0040g03400.t01	Wine grape	plastid	74.69	73.77
TraesCS5B01G279400.1	Wheat	plastid	74.06	73.6
TraesCS5D01G287000.1	Wheat	plastid	73.44	72.98
KRH32305	Soybean	plastid	72.81	72.14
TraesCS5A01G280400.1	Wheat	plastid	72.5	72.05
Solyc09g010510.2.1	Tomato	cytosol, mitochondrion, plastid	71.88	71.88
KRG95813	Soybean	nucleus	71.88	71.21
KRH19708	Soybean	nucleus	71.25	70.59
KRH67540	Soybean	nucleus	70.94	70.28
CDY68648	Canola	cytosol	45.62	69.86
CDY10440	Canola	plastid	70.62	69.54
Bra005188.1-P	Field mustard	cytosol	68.75	69.4
CDY52816	Canola	cytosol	69.06	69.06
CDX74954	Canola	cytosol	69.06	69.06
CDY40365	Canola	mitochondrion	70.94	68.58
CDY52817	Canola	cytosol	68.44	68.44
Bra009580.1-P	Field mustard	mitochondrion	70.62	68.28
CDY18436	Canola	cytosol	68.44	68.22
Bra017180.1-P	Field mustard	cytosol	68.44	68.22
CDX81232	Canola	cytosol	68.12	67.91
CDY11217	Canola	mitochondrion	70.0	67.67
TraesCS3A01G077400.2	Wheat	cytosol, plastid	73.75	67.43
Bra005729.1-P	Field mustard	mitochondrion	69.69	67.37
AT5G02540.1	Thale cress	mitochondrion	69.38	67.07
HORVU3Hr1G013970.6	Barley	plastid	73.44	66.2
AT2G37540.1	Thale cress	cytosol	65.94	65.73
CDX88292	Canola	cytosol	31.88	64.97
CDY55418	Canola	cytosol	59.69	63.88
HORVU5Hr1G075530.8	Barley	cytosol, nucleus, plastid	74.06	61.08
TraesCS3D01G077500.2	Wheat	cytosol, plastid	65.0	59.43
GSMUA_Achr2P18620_001	Banana	plastid	58.12	58.86
CDY10441	Canola	cytosol, extracellular, mitochondrion, plastid	25.0	58.39
GSMUA_Achr2P08080_001	Banana	mitochondrion	59.06	58.15
Zm00001d039397_P001	Maize	cytosol	43.75	57.61
GSMUA_AchrUn_...	Banana	cytosol	55.31	56.55
GSMUA_Achr11P...	Banana	cytosol	49.69	46.09
GSMUA_Achr8P11870_001	Banana	cytosol	48.75	45.88
GSMUA_Achr1P25440_001	Banana	cytosol	41.88	43.51
GSMUA_Achr3P14270_001	Banana	plastid	32.5	26.87
GSMUA_Achr7P04280_001	Banana	plastid	32.81	26.38
GSMUA_Achr11P...	Banana	plastid	31.56	25.51
GSMUA_Achr3P22130_001	Banana	cytosol	55.94	25.43
GSMUA_Achr7P04190_001	Banana	cytosol	29.69	23.17
GSMUA_AchrUn_...	Banana	cytosol	12.19	15.35

Protein Annotations

EnsemblPlants:GSMUA_Achr8P20890_001	EnsemblPlants:GSMUA_Achr8T20890_001	EnsemblPlantsGene:GSMUA_Achr8G20890_001	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam
PANTHER:PTHR24320	PANTHER:PTHR24320:SF81	PFAM:PF00106	PRINTS:PR00080	PRINTS:PR00081	SEG:seg
SUPFAM:SSF51735	UniParc:UPI0002956B3D	UniProt:M0TS92	MapMan:35.1	:	:

Description

Putative Retinol dehydrogenase 12 [Source:GMGC_GENE;Acc:GSMUA_Achr8G20890_001]

Coordinates

chr8:+:25969022..25971715

Molecular Weight (calculated)

35198.7 Da

IEP (calculated)

8.036

GRAVY (calculated)

0.006

Length

320 amino acids

Sequence
(BLAST)

001: MGLFRLVTGL PGPSGFGSAS TAEQVTDGID ASHLTVIITG GASGIGEETA RVFALRGAHV IIAARNMAAA NDVQQHILQC TPMAKVDVLK LDLSSLKSVR
101: AFADKFLSLD LPLNILINNA GVMFCPYQLS EDGIEMQFAT NHLGHFFLTN LLLDKMKTTA EKTGIEGRIV NLSSIAHLNT YEGGIWFDKL NHKEVYLDKK
201: AYGQSKLANI LHANELSRRL KEDGANITVN SVHPGLIMTN LMRHSFHLMR VLKLFTYIFW KNVPQGAATT CYVALHPSLK GVTGKYFLDC NEEKPSYLAR
301: DETLAEKLWD FSEKLAASTK

Best Arabidopsis Sequence Match ( AT5G02540.1 )
(BLAST)

001: MGLYSLITGR RGPSGFGSAS TAEEVTQGID ATNLTAIITG GTGGIGMETA RVLSKRGAHV VIGARNMGAA ENAKTEILRQ NANARVTLLQ LDLSSIKSIK
101: AFVREFHALH LPLNLLINNA GVMFCPYQLS EDGIELQFAT NHIGHFLLTN LLLDTMKNTA KTSGVEGRIL NVSSVAHIYT YQEGIQFDSI NDICSYSDKR
201: AYGQSKLANI LHANELSRQL QEEGVNITAN SVHPGLILTN LFQHTALLMR FLKFFSFYLW KNIPQGAATT CYVALHPSVK GVTGKYFADC NEVTPSKLAR
301: DETLAQKLWD FSVKLINSVS KKNYLGFDDT T

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KCF2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.