Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- plastid 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P03500_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G24050.1 | GSMUA_Achr1P03500_001 | AT1G20770.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P11870_001 | Banana | cytosol | 78.84 | 80.0 |
| VIT_02s0025g02190.t01 | Wine grape | cytosol | 68.7 | 70.54 |
| CDY53896 | Canola | plastid | 40.87 | 70.5 |
| TraesCS4B01G358400.1 | Wheat | mitochondrion | 67.25 | 69.67 |
| TraesCS5A01G527400.1 | Wheat | mitochondrion | 66.96 | 69.37 |
| Os03t0115700-01 | Rice | mitochondrion | 66.67 | 69.28 |
| TraesCS4D01G351800.1 | Wheat | mitochondrion | 66.38 | 68.56 |
| TraesCS5A01G527300.1 | Wheat | mitochondrion | 67.54 | 68.53 |
| TraesCS4B01G358200.1 | Wheat | mitochondrion, plastid | 66.09 | 68.47 |
| KRH41377 | Soybean | cytosol | 66.38 | 67.95 |
| TraesCS4B01G358500.1 | Wheat | mitochondrion | 67.54 | 67.73 |
| PGSC0003DMT400031933 | Potato | cytosol | 66.09 | 67.66 |
| Solyc08g082870.2.1 | Tomato | cytosol | 65.8 | 67.36 |
| Bra019248.1-P | Field mustard | cytosol | 64.64 | 67.17 |
| AT1G64590.1 | Thale cress | plastid | 64.93 | 67.07 |
| CDY72311 | Canola | cytosol | 39.13 | 66.83 |
| HORVU4Hr1G086380.1 | Barley | mitochondrion, plastid | 66.67 | 66.47 |
| AT4G24050.1 | Thale cress | cytosol | 63.77 | 66.27 |
| OQU93381 | Sorghum | mitochondrion | 68.12 | 66.2 |
| CDY72089 | Canola | cytosol | 38.55 | 66.17 |
| CDX76323 | Canola | cytosol | 63.48 | 65.96 |
| Bra013757.1-P | Field mustard | cytosol | 63.48 | 65.96 |
| CDY10985 | Canola | cytosol | 63.19 | 65.66 |
| TraesCS4D01G351700.1 | Wheat | mitochondrion, plastid | 66.67 | 65.34 |
| Bra027706.1-P | Field mustard | plastid | 65.22 | 65.03 |
| Zm00001d027353_P001 | Maize | mitochondrion | 67.83 | 64.82 |
| CDY53433 | Canola | plastid | 64.93 | 64.37 |
| CDY50440 | Canola | mitochondrion | 62.61 | 63.72 |
| Os06t0129100-01 | Rice | mitochondrion | 64.64 | 63.17 |
| Zm00001d045495_P001 | Maize | mitochondrion | 65.8 | 62.88 |
| Bra027725.1-P | Field mustard | plastid | 64.35 | 62.71 |
| EER87765 | Sorghum | mitochondrion | 64.93 | 62.22 |
| HORVU7Hr1G011180.12 | Barley | plastid | 64.64 | 62.12 |
| TraesCS7A01G061000.1 | Wheat | mitochondrion, plastid | 63.77 | 61.97 |
| TraesCS4B01G358300.1 | Wheat | plastid | 55.65 | 61.54 |
| TraesCS7D01G055800.1 | Wheat | mitochondrion, plastid | 63.77 | 60.77 |
| TraesCS4A01G428800.1 | Wheat | mitochondrion, plastid | 63.19 | 60.72 |
| GSMUA_Achr1P25440_001 | Banana | cytosol | 45.51 | 50.97 |
| GSMUA_Achr11P... | Banana | cytosol | 46.67 | 49.69 |
| GSMUA_Achr8P20890_001 | Banana | cytosol, mitochondrion, plastid | 46.09 | 49.69 |
| GSMUA_Achr2P18620_001 | Banana | plastid | 44.93 | 49.05 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, plastid | 45.51 | 48.91 |
| GSMUA_Achr7P15240_001 | Banana | plastid | 45.22 | 48.15 |
| GSMUA_AchrUn_... | Banana | cytosol | 42.61 | 46.96 |
| GSMUA_Achr2P08080_001 | Banana | mitochondrion | 42.9 | 45.54 |
| CDY08387 | Canola | cytosol, nucleus, plastid | 65.51 | 25.36 |
| CDY47833 | Canola | cytosol, nucleus, plastid | 64.93 | 25.14 |
| GSMUA_Achr11P... | Banana | plastid | 26.96 | 23.48 |
| GSMUA_Achr7P04190_001 | Banana | cytosol | 26.38 | 22.2 |
| GSMUA_Achr7P04280_001 | Banana | plastid | 25.51 | 22.11 |
| GSMUA_Achr3P14270_001 | Banana | plastid | 24.35 | 21.71 |
| GSMUA_Achr3P22130_001 | Banana | cytosol | 43.19 | 21.16 |
| GSMUA_AchrUn_... | Banana | cytosol | 11.01 | 14.96 |
| Bra027724.1-P | Field mustard | cytosol, plastid | 0.58 | 0.37 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr11P21750_001 | EnsemblPlants:GSMUA_Achr11T21750_001 | EnsemblPlantsGene:GSMUA_Achr11G21750_001 | Gene3D:3.40.50.720 | InterPro:NAD(P)-bd_dom_sf | InterPro:SDR_fam |
| PANTHER:PTHR24320 | PANTHER:PTHR24320:SF114 | PFAM:PF00106 | PRINTS:PR00080 | PRINTS:PR00081 | SEG:seg |
| SUPFAM:SSF51735 | UniParc:UPI0002962D2C | UniProt:M0RUA5 | MapMan:35.1 | : | : |
Description
Putative WW domain-containing oxidoreductase [Source:GMGC_GENE;Acc:GSMUA_Achr11G21750_001]
Coordinates
chr11:+:22232846..22234896
Molecular Weight (calculated)
37600.3 Da
IEP (calculated)
7.004
GRAVY (calculated)
0.003
Length
345 amino acids
Sequence
(BLAST)
(BLAST)
001: MLETVRYLIG SVGDSGFGSK STGEEVTAAT PDLRSITAII TGATSGIGTE TARVLAMRGA RLVLPTRSLK TADEVKARIV AEIPDAEVIL LPLDLSSLSS
101: VRCFVSLFLA LHLPLNLLIN NAGRMVYEHA VSEDGVEMTF ATNYLGHFLL TKLLLNKMAE TARETGIQGR IVNVSSHVHS WFSGDCLSYL DRITRKQIPY
201: DATQAYALSK LANILHTKEL AERLKQMDAN VTANCVHPGV VRTRLNRDRE GFVTDLVFFL VTKLVKTMPQ AAATACYVAT HPRLVGISGR YFADCNEALP
301: SPLASRPHEA AQLWRASESM TATDLDRTAS GLEPQLASDR PDDEK
101: VRCFVSLFLA LHLPLNLLIN NAGRMVYEHA VSEDGVEMTF ATNYLGHFLL TKLLLNKMAE TARETGIQGR IVNVSSHVHS WFSGDCLSYL DRITRKQIPY
201: DATQAYALSK LANILHTKEL AERLKQMDAN VTANCVHPGV VRTRLNRDRE GFVTDLVFFL VTKLVKTMPQ AAATACYVAT HPRLVGISGR YFADCNEALP
301: SPLASRPHEA AQLWRASESM TATDLDRTAS GLEPQLASDR PDDEK
001: MIETGKYLLG AAGASGFGSK STAEEVTENC DLRSITAVIT GATSGIGAET ARVLAKRGAR LIFPARNVKA AEEAKERIVS EFPETEIVVM KLDLSSIASV
101: RNFVADFESL DLPLNLLINN AGKLAHEHAI SEDGIEMTFA TNYLGHFLLT NLLLNKMIQT AEETGVQGRI VNVTSGIHGW FSGDLIEYLR LISQPKCQFD
201: ATRAYALSKL ANVLHTKELS SRLQKIGANV TVNCVHPGVV RTRLTRDREG LLTDLVFFLA SKLVKTVPQA AATTCYVATN PRLVNVSGKY FTDCNETTPS
301: GLGTNSSEAT KLWAASEILV TQHSKTSFDP CS
101: RNFVADFESL DLPLNLLINN AGKLAHEHAI SEDGIEMTFA TNYLGHFLLT NLLLNKMIQT AEETGVQGRI VNVTSGIHGW FSGDLIEYLR LISQPKCQFD
201: ATRAYALSKL ANVLHTKELS SRLQKIGANV TVNCVHPGVV RTRLTRDREG LLTDLVFFLA SKLVKTVPQA AATTCYVATN PRLVNVSGKY FTDCNETTPS
301: GLGTNSSEAT KLWAASEILV TQHSKTSFDP CS
Arabidopsis Description
AT4g24050/T19F6_40 [Source:UniProtKB/TrEMBL;Acc:O22985]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.