Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G088210.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G24050.1 | HORVU2Hr1G088210.1 | AT1G20770.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G358200.1 | Wheat | mitochondrion, plastid | 89.88 | 93.39 |
| TraesCS5A01G527300.1 | Wheat | mitochondrion | 91.04 | 92.65 |
| TraesCS4D01G351700.1 | Wheat | mitochondrion, plastid | 89.88 | 88.35 |
| TraesCS4B01G358300.1 | Wheat | plastid | 76.88 | 85.26 |
| Os03t0115700-01 | Rice | mitochondrion | 81.79 | 85.24 |
| OQU93381 | Sorghum | mitochondrion | 81.79 | 79.72 |
| Zm00001d027353_P001 | Maize | mitochondrion | 81.5 | 78.12 |
| GSMUA_Achr8P11870_001 | Banana | cytosol | 71.1 | 72.35 |
| CDY53896 | Canola | plastid | 40.17 | 69.5 |
| VIT_02s0025g02190.t01 | Wine grape | cytosol | 67.34 | 69.35 |
| KRH41377 | Soybean | cytosol | 67.05 | 68.84 |
| Solyc08g082870.2.1 | Tomato | cytosol | 66.47 | 68.25 |
| PGSC0003DMT400031933 | Potato | cytosol | 66.47 | 68.25 |
| GSMUA_Achr11P... | Banana | cytosol | 66.47 | 66.67 |
| AT4G24050.1 | Thale cress | cytosol | 63.29 | 65.96 |
| Bra019248.1-P | Field mustard | cytosol | 63.01 | 65.66 |
| CDY72311 | Canola | cytosol | 37.86 | 64.85 |
| CDY10985 | Canola | cytosol | 61.85 | 64.46 |
| AT1G64590.1 | Thale cress | plastid | 62.14 | 64.37 |
| CDY72089 | Canola | cytosol | 37.28 | 64.18 |
| Bra013757.1-P | Field mustard | cytosol | 61.56 | 64.16 |
| CDX76323 | Canola | cytosol | 61.56 | 64.16 |
| Bra027706.1-P | Field mustard | plastid | 63.29 | 63.29 |
| CDY53433 | Canola | plastid | 63.29 | 62.93 |
| CDY50440 | Canola | mitochondrion | 61.56 | 62.83 |
| HORVU7Hr1G011180.12 | Barley | plastid | 65.03 | 62.67 |
| Bra027725.1-P | Field mustard | plastid | 63.01 | 61.58 |
| HORVU3Hr1G013970.6 | Barley | plastid | 45.95 | 44.79 |
| HORVU5Hr1G075530.8 | Barley | cytosol, nucleus, plastid | 46.24 | 41.24 |
| HORVU4Hr1G018230.1 | Barley | plastid | 44.8 | 39.95 |
| CDY47833 | Canola | cytosol, nucleus, plastid | 62.72 | 24.35 |
| CDY08387 | Canola | cytosol, nucleus, plastid | 62.72 | 24.35 |
| HORVU1Hr1G044680.1 | Barley | plastid | 26.01 | 22.78 |
| HORVU4Hr1G073090.1 | Barley | plastid | 8.67 | 21.43 |
| HORVU2Hr1G006120.3 | Barley | plastid | 7.51 | 21.31 |
| HORVU2Hr1G119050.2 | Barley | mitochondrion | 20.52 | 18.93 |
| HORVU5Hr1G104070.1 | Barley | plastid | 6.94 | 18.75 |
| HORVU2Hr1G020490.1 | Barley | plastid | 8.38 | 17.9 |
| HORVU2Hr1G119090.2 | Barley | plastid | 6.94 | 5.67 |
| Bra027724.1-P | Field mustard | cytosol, plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G086380.1 | EnsemblPlantsGene:HORVU4Hr1G086380 | Gene3D:3.40.50.720 | InterPro:NAD(P)-bd_dom_sf | InterPro:SDR_fam | PANTHER:PTHR24320 |
| PANTHER:PTHR24320:SF114 | PFAM:PF00106 | PRINTS:PR00080 | PRINTS:PR00081 | SEG:seg | SUPFAM:SSF51735 |
| UniParc:UPI000B48549D | UniProt:A0A287PZF4 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chrchr4H:-:634116422..634117986
Molecular Weight (calculated)
36814.4 Da
IEP (calculated)
8.382
GRAVY (calculated)
0.173
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPAARYLLG SPGASGFGSK STAEEVTAAC PDLGSLTAII TGATSGIGAE TARVLAMRGA RVVIPARSVK AAEDMRARIL GECPGADVLV LHLDLSSLAS
101: VRDFARRFLS LGLPLHLLIN NAGKFSHGQL ALSEDGVEMT FATNYLGHFL LTKLLLARMA ETAAATGVQG RIVNVSSSVH GWFSGDWADY LQLVTRLGAN
201: QAWHVHVHVH YRPYDATQAY AVSKLANVLH TKELAARLQE VGADVTVNCV HPGIVRTRLN RDREGLITDL VFLLLSKLLK TIPQAAATTC YAAVHPRLAG
301: VSGRYLADCN EALPSPAAAS RSEAARLWQA SEDMICAASS QPDRTI
101: VRDFARRFLS LGLPLHLLIN NAGKFSHGQL ALSEDGVEMT FATNYLGHFL LTKLLLARMA ETAAATGVQG RIVNVSSSVH GWFSGDWADY LQLVTRLGAN
201: QAWHVHVHVH YRPYDATQAY AVSKLANVLH TKELAARLQE VGADVTVNCV HPGIVRTRLN RDREGLITDL VFLLLSKLLK TIPQAAATTC YAAVHPRLAG
301: VSGRYLADCN EALPSPAAAS RSEAARLWQA SEDMICAASS QPDRTI
001: MIETGKYLLG AAGASGFGSK STAEEVTENC DLRSITAVIT GATSGIGAET ARVLAKRGAR LIFPARNVKA AEEAKERIVS EFPETEIVVM KLDLSSIASV
101: RNFVADFESL DLPLNLLINN AGKLAHEHAI SEDGIEMTFA TNYLGHFLLT NLLLNKMIQT AEETGVQGRI VNVTSGIHGW FSGDLIEYLR LISQPKCQFD
201: ATRAYALSKL ANVLHTKELS SRLQKIGANV TVNCVHPGVV RTRLTRDREG LLTDLVFFLA SKLVKTVPQA AATTCYVATN PRLVNVSGKY FTDCNETTPS
301: GLGTNSSEAT KLWAASEILV TQHSKTSFDP CS
101: RNFVADFESL DLPLNLLINN AGKLAHEHAI SEDGIEMTFA TNYLGHFLLT NLLLNKMIQT AEETGVQGRI VNVTSGIHGW FSGDLIEYLR LISQPKCQFD
201: ATRAYALSKL ANVLHTKELS SRLQKIGANV TVNCVHPGVV RTRLTRDREG LLTDLVFFLA SKLVKTVPQA AATTCYVATN PRLVNVSGKY FTDCNETTPS
301: GLGTNSSEAT KLWAASEILV TQHSKTSFDP CS
Arabidopsis Description
AT4g24050/T19F6_40 [Source:UniProtKB/TrEMBL;Acc:O22985]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.