Factsheet for Bra027706.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53433	Canola	plastid	98.27	97.7
Bra027725.1-P	Field mustard	plastid	93.64	91.53
AT1G64590.1	Thale cress	plastid	86.99	90.12
Bra019248.1-P	Field mustard	cytosol	71.97	75.0
KRH41377	Soybean	cytosol	71.39	73.29
Solyc08g082870.2.1	Tomato	cytosol	71.1	73.0
PGSC0003DMT400031933	Potato	cytosol	71.1	73.0
VIT_02s0025g02190.t01	Wine grape	cytosol	70.23	72.32
Bra013757.1-P	Field mustard	cytosol	69.36	72.29
GSMUA_Achr8P11870_001	Banana	cytosol	67.92	69.12
TraesCS5A01G527400.1	Wheat	mitochondrion	63.58	66.07
TraesCS4B01G358400.1	Wheat	mitochondrion	63.58	66.07
TraesCS4D01G351800.1	Wheat	mitochondrion	63.58	65.87
GSMUA_Achr11P...	Banana	cytosol	65.03	65.22
TraesCS5A01G527300.1	Wheat	mitochondrion	63.87	65.0
TraesCS4B01G358200.1	Wheat	mitochondrion, plastid	62.43	64.86
Os03t0115700-01	Rice	mitochondrion	62.14	64.76
TraesCS4B01G358500.1	Wheat	mitochondrion	63.58	63.95
HORVU4Hr1G086380.1	Barley	mitochondrion, plastid	63.29	63.29
TraesCS4D01G351700.1	Wheat	mitochondrion, plastid	62.72	61.65
Os06t0129100-01	Rice	mitochondrion	62.72	61.47
Zm00001d045495_P001	Maize	mitochondrion	63.29	60.66
TraesCS4B01G358300.1	Wheat	plastid	54.34	60.26
EER87765	Sorghum	mitochondrion	62.43	60.0
OQU93381	Sorghum	mitochondrion	61.27	59.72
TraesCS7A01G061000.1	Wheat	mitochondrion, plastid	60.69	59.15
HORVU7Hr1G011180.12	Barley	plastid	61.27	59.05
Zm00001d027353_P001	Maize	mitochondrion	61.56	59.0
TraesCS7D01G055800.1	Wheat	mitochondrion, plastid	60.69	58.01
TraesCS4A01G428800.1	Wheat	mitochondrion, plastid	60.12	57.94
Bra017180.1-P	Field mustard	cytosol	45.66	49.22
Bra009580.1-P	Field mustard	mitochondrion	46.24	48.34
Bra005188.1-P	Field mustard	cytosol	43.93	47.95
Bra005729.1-P	Field mustard	mitochondrion	44.8	46.83
Bra020819.1-P	Field mustard	cytosol, plastid	41.62	44.72
Bra035220.1-P	Field mustard	cytosol	40.46	44.16
Bra013690.1-P	Field mustard	plastid	41.04	43.83
Bra037939.1-P	Field mustard	cytosol	48.27	33.6
Bra026308.1-P	Field mustard	cytosol, nucleus, peroxisome	30.06	27.88
Bra029096.1-P	Field mustard	nucleus	28.03	25.66
Bra033415.1-P	Field mustard	plastid	28.32	24.5
Bra019049.1-P	Field mustard	plastid	27.75	24.12
Bra019028.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	28.03	23.89
Bra030540.1-P	Field mustard	plastid	27.46	23.87
Bra026349.1-P	Field mustard	plastid	26.3	23.45
Bra003004.1-P	Field mustard	plastid	26.88	23.08
Bra022628.1-P	Field mustard	cytosol, mitochondrion	26.59	22.94
Bra027724.1-P	Field mustard	cytosol, plastid	1.73	1.1

Protein Annotations

EnsemblPlants:Bra027706.1	EnsemblPlants:Bra027706.1-P	EnsemblPlantsGene:Bra027706	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam
PANTHER:PTHR24320	PANTHER:PTHR24320:SF114	PFAM:PF00106	PRINTS:PR00081	SEG:seg	SUPFAM:SSF51735
UniParc:UPI0002542309	UniProt:M4EFZ3	MapMan:35.1	:	:	:

Description

AT1G64590 (E=4e-156) | short-chain dehydrogenase/reductase (SDR) family protein

Coordinates

chrA09:-:6791409..6793030

Molecular Weight (calculated)

37753.8 Da

IEP (calculated)

9.542

GRAVY (calculated)

0.061

Length

346 amino acids

Sequence
(BLAST)

001: MIETVKHLIG SGGPSGFGSR STAEYVTVNC DLRSLTAIIT GATSGIGAET ARVLAKRGAR LVIPARSLKT AEETKSRILS EFPDAEIIVM HLDLSSLASV
101: RRFVADFESL HLPLNILINN AGKYAHKHAI SEDGVEMTFA TNYLGHFLLT KLLLKNMIET AAQTGVQGRI VNVTSVIHSW FSGDMLQYLA DISRNNSYDA
201: TRAYALSKLA NVLHTIELSR ILHKMDANVT ANCVHPGIVR TRLTRDREGL ITDLVFFLTS KLLKSVPQAA ATTCYVATSP RLRNVCGKYF SDCNEARTSK
301: LGSCGVKAQR LWTASELLVS PASCTPHLYR TFKCSLTNAM CKSQAL

Best Arabidopsis Sequence Match ( AT1G64590.1 )
(BLAST)

001: MIETVKHLIG SGGPSGFGSR STADHVTCNS DLRSLTAIIT GATSGIGAET ARVLAKRGAR LVLPARSVKT AEETKARILS EFPDAEIIVM HLDLSSLTSV
101: RRFVDDFESL NLPLNILINN AGKYAHKHAL SEDGVEMTFA TNYLGHFLLT KLLLKKMIET AAQTGVQGRI VNVTSVVHSW FSGDMLQYLA DISRNNRNYD
201: ATRAYALSKL ANVLHTVELS RLLHKMDANV TANCVHPGIV KTRLTRDREG VVTDLVFFLT SKLLKSVPQA AATTCYVATS PRLRNVCGKY FSDCNEARSS
301: KSGSCNLKAQ RLWTASDLLV SPPNSTTNLS HTSF

Arabidopsis Description

At1g64590/F1N19_15 [Source:UniProtKB/TrEMBL;Acc:Q9SGV6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.