Factsheet for TraesCS7D01G055800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

nucleus 1
mitochondrion 4
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G290300.1
TraesCS1B01G299500.1
TraesCS1D01G288900.1
TraesCS2A01G364600.1
TraesCS2B01G383200.1
TraesCS2D01G362600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24050.1	TraesCS1A01G290300.1	AT1G20770.1	21798944
AT4G24050.1	TraesCS1B01G299500.1	AT1G20770.1	21798944
AT4G24050.1	TraesCS1D01G288900.1	AT1G20770.1	21798944
AT4G24050.1	TraesCS2A01G364600.1	AT1G20770.1	21798944
AT4G24050.1	TraesCS2B01G383200.1	AT1G20770.1	21798944
AT4G24050.1	TraesCS2D01G362600.1	AT1G20770.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G428800.1	Wheat	mitochondrion, plastid	94.75	95.54
HORVU7Hr1G011180.12	Barley	plastid	93.09	93.87
EER87765	Sorghum	mitochondrion	75.97	76.39
Os06t0129100-01	Rice	mitochondrion	74.31	76.2
Zm00001d045495_P001	Maize	mitochondrion	74.59	74.79
GSMUA_Achr8P11870_001	Banana	cytosol	64.92	69.12
TraesCS4D01G351800.1	Wheat	mitochondrion	62.15	67.37
CDY53896	Canola	plastid	35.36	64.0
GSMUA_Achr11P...	Banana	cytosol	60.77	63.77
VIT_02s0025g02190.t01	Wine grape	cytosol	59.12	63.69
TraesCS4D01G351700.1	Wheat	mitochondrion, plastid	61.88	63.64
AT1G64590.1	Thale cress	plastid	57.73	62.57
Bra019248.1-P	Field mustard	cytosol	56.91	62.05
PGSC0003DMT400031933	Potato	cytosol	57.46	61.72
AT4G24050.1	Thale cress	cytosol	56.35	61.45
KRH41377	Soybean	cytosol	57.18	61.42
Solyc08g082870.2.1	Tomato	cytosol	56.91	61.13
CDY10985	Canola	cytosol	55.8	60.84
Bra027706.1-P	Field mustard	plastid	58.01	60.69
CDY53433	Canola	plastid	58.29	60.63
Bra013757.1-P	Field mustard	cytosol	55.52	60.54
CDY72311	Canola	cytosol	33.7	60.4
CDX76323	Canola	cytosol	55.25	60.24
CDY72089	Canola	cytosol	33.15	59.7
Bra027725.1-P	Field mustard	plastid	57.73	59.04
CDY50440	Canola	mitochondrion	55.25	59.0
TraesCS4D01G003200.1	Wheat	golgi	41.16	47.15
TraesCS5D01G287000.1	Wheat	plastid	41.71	46.89
TraesCS4D01G002700.2	Wheat	mitochondrion, plastid	40.61	46.67
TraesCS4D01G093500.1	Wheat	mitochondrion	40.61	45.51
TraesCS1D01G210800.1	Wheat	plastid	39.78	45.28
TraesCS4D01G003400.2	Wheat	mitochondrion	39.23	44.1
TraesCS3D01G077500.2	Wheat	cytosol, plastid	35.91	37.14
TraesCS2D01G563700.1	Wheat	cytosol	17.68	26.56
TraesCS6D01G051500.1	Wheat	cytosol	27.07	23.96
CDY08387	Canola	cytosol, nucleus, plastid	57.73	23.46
CDY47833	Canola	cytosol, nucleus, plastid	57.73	23.46
TraesCS2D01G563600.1	Wheat	golgi, plastid	24.31	22.68
TraesCS1D01G168700.2	Wheat	plastid	24.59	21.34
Bra027724.1-P	Field mustard	cytosol, plastid	0.55	0.37

Protein Annotations

EnsemblPlants:TraesCS7D01G055800.1	EnsemblPlantsGene:TraesCS7D01G055800	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	PANTHER:PTHR24320
PANTHER:PTHR24320:SF147	PFAM:PF00106	PRINTS:PR00080	PRINTS:PR00081	SEG:seg	SUPFAM:SSF51735
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr7D:+:29830560..29832156

Molecular Weight (calculated)

38283.8 Da

IEP (calculated)

9.358

GRAVY (calculated)

0.090

Length

362 amino acids

Sequence
(BLAST)

001: MLSSLRYLAG SAGPSGYGSR TTADEATLPA GDLSHITAIV TGATSGIGAE TARVLARRGA RLVLPARNLK AAEETRARIL ADLGDAGSGG GRVVVLPLDL
101: SSLASVRRFV HRFLALRLPL NLLINNAGQY AERFAVSEDG VEMTFATNYL GHFLLTELLL PAMADTARAT GVQGRVVNVS STVHAWFAAD AGDDGPLAYL
201: HRVTRKATPY DPTRAYALSK LANVLHTTAL AGRLREMGAD VTANCVHPGI VRTRLIRDRA GLVTNTVFFL ASKLLKTVPQ AAATTCYAAV HPAVAGVSGR
301: YFADCNEAAP SRLACSAEEA SRLWSFSEAI TAEKEKEESA LPVTSFRFQV QSSNADRGMA IA

Best Arabidopsis Sequence Match ( AT5G50130.1 )
(BLAST)

001: MKGTLRYLAG IAGPNGFGSR STAEQVTQHS FFPCSHLTAI ITGGTSGIGA ETARVLAKRG VRVVMAVRDM KKAEMVKERI IRENPEADII LFEIDLSSLS
101: SVARFCSQFL SQDLPLNILI NNAGVFSPNL EFSEEKIELT FATNFLGHYL LTEMLIEKMI DTAEKSGIEG RIINLSSVIH NWVKPDCFSF PKLLHPISRY
201: NGTRAYAQSK LATILHAKAL SKQLKDRNAN VTINAVHPGI VKTGIIRAHK GLFTDSLFLI ASKLLKSISQ GAATTCYVAL SNETKGLSGK YFADCNETNC
301: SDLANDEYVA LKLCTQSRAL IHDHLHEFQI HALPNLCFL

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8RWK2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.