Factsheet for Bra013757.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012248.1-P
Bra016454.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24050.1	Bra012248.1-P	AT1G20770.1	21798944
AT4G24050.1	Bra016454.1-P	AT1G20770.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72311	Canola	cytosol	58.43	96.04
CDY72089	Canola	cytosol	57.83	95.52
Bra019248.1-P	Field mustard	cytosol	94.88	94.88
AT4G24050.1	Thale cress	cytosol	91.27	91.27
Solyc08g082870.2.1	Tomato	cytosol	75.3	74.18
KRH41377	Soybean	cytosol	75.3	74.18
PGSC0003DMT400031933	Potato	cytosol	74.7	73.59
VIT_02s0025g02190.t01	Wine grape	cytosol	74.1	73.21
Bra027706.1-P	Field mustard	plastid	72.29	69.36
GSMUA_Achr8P11870_001	Banana	cytosol	68.37	66.76
Bra027725.1-P	Field mustard	plastid	70.78	66.38
TraesCS4B01G358400.1	Wheat	mitochondrion	64.46	64.26
TraesCS5A01G527400.1	Wheat	mitochondrion	64.46	64.26
TraesCS4D01G351800.1	Wheat	mitochondrion	64.46	64.07
TraesCS4B01G358200.1	Wheat	mitochondrion, plastid	63.86	63.66
Os03t0115700-01	Rice	mitochondrion	63.55	63.55
GSMUA_Achr11P...	Banana	cytosol	65.96	63.48
TraesCS5A01G527300.1	Wheat	mitochondrion	64.46	62.94
TraesCS4B01G358500.1	Wheat	mitochondrion	64.46	62.21
HORVU4Hr1G086380.1	Barley	mitochondrion, plastid	64.16	61.56
TraesCS4D01G351700.1	Wheat	mitochondrion, plastid	64.16	60.51
Os06t0129100-01	Rice	mitochondrion	63.55	59.77
OQU93381	Sorghum	mitochondrion	63.55	59.44
Zm00001d045495_P001	Maize	mitochondrion	63.86	58.73
TraesCS4B01G358300.1	Wheat	plastid	55.12	58.65
EER87765	Sorghum	mitochondrion	62.95	58.06
Zm00001d027353_P001	Maize	mitochondrion	62.95	57.89
HORVU7Hr1G011180.12	Barley	plastid	61.45	56.82
TraesCS7A01G061000.1	Wheat	mitochondrion, plastid	60.24	56.34
TraesCS4A01G428800.1	Wheat	mitochondrion, plastid	60.24	55.71
TraesCS7D01G055800.1	Wheat	mitochondrion, plastid	60.54	55.52
Bra017180.1-P	Field mustard	cytosol	49.1	50.78
Bra005188.1-P	Field mustard	cytosol	48.19	50.47
Bra005729.1-P	Field mustard	mitochondrion	46.99	47.13
Bra009580.1-P	Field mustard	mitochondrion	46.99	47.13
Bra035220.1-P	Field mustard	cytosol	41.57	43.53
Bra013690.1-P	Field mustard	plastid	42.47	43.52
Bra020819.1-P	Field mustard	cytosol, plastid	42.17	43.48
Bra037939.1-P	Field mustard	cytosol	50.3	33.6
Bra026308.1-P	Field mustard	cytosol, nucleus, peroxisome	29.52	26.27
Bra029096.1-P	Field mustard	nucleus	29.22	25.66
Bra019028.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	29.52	24.14
Bra019049.1-P	Field mustard	plastid	28.61	23.87
Bra033415.1-P	Field mustard	plastid	28.61	23.75
Bra030540.1-P	Field mustard	plastid	28.31	23.62
Bra026349.1-P	Field mustard	plastid	27.11	23.2
Bra022628.1-P	Field mustard	cytosol, mitochondrion	28.01	23.19
Bra003004.1-P	Field mustard	plastid	27.71	22.83
Bra027724.1-P	Field mustard	cytosol, plastid	0.3	0.18

Protein Annotations

EnsemblPlants:Bra013757.1	EnsemblPlants:Bra013757.1-P	EnsemblPlantsGene:Bra013757	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam
PANTHER:PTHR24320	PANTHER:PTHR24320:SF114	PFAM:PF00106	PRINTS:PR00081	SEG:seg	SUPFAM:SSF51735
UniParc:UPI00025460A9	UniProt:M4DB97	MapMan:35.1	:	:	:

Description

AT4G24050 (E=3e-163) | short-chain dehydrogenase/reductase (SDR) family protein

Coordinates

chrA01:+:7615354..7617792

Molecular Weight (calculated)

35780.0 Da

IEP (calculated)

8.224

GRAVY (calculated)

0.010

Length

332 amino acids

Sequence
(BLAST)

001: MIDTGRYLIG TAGVSGFGSK STPDEGTENC DLRSTTAIIT GATSGIGAET ARVLAKRGAR LIFPARNVKA AEEAKGRIVS EFPGTEIVVM ELDLSSMSSV
101: RSFVAGFESL HLPLNLLINN AGRLAHEHAI SEDGIEMTFA TNYLGHFLLT NLLLKKMIQT AEETGVQGRI VNVTSGIHGW FTGDLIEYLR LISQPKCQFD
201: ATRAYALSKL ANVLHTKELS SRLQKIGANV TVNCVHPGVV KTRLTRDREG LLTDLVFFLT SKLLKTVPQA AATTCYVATN PRLVNVSGKY FTDCNETTPS
301: GLGSNSSEAT KLWAASEILV TQHPKAAFDP FS

Best Arabidopsis Sequence Match ( AT4G24050.1 )
(BLAST)

001: MIETGKYLLG AAGASGFGSK STAEEVTENC DLRSITAVIT GATSGIGAET ARVLAKRGAR LIFPARNVKA AEEAKERIVS EFPETEIVVM KLDLSSIASV
101: RNFVADFESL DLPLNLLINN AGKLAHEHAI SEDGIEMTFA TNYLGHFLLT NLLLNKMIQT AEETGVQGRI VNVTSGIHGW FSGDLIEYLR LISQPKCQFD
201: ATRAYALSKL ANVLHTKELS SRLQKIGANV TVNCVHPGVV RTRLTRDREG LLTDLVFFLA SKLVKTVPQA AATTCYVATN PRLVNVSGKY FTDCNETTPS
301: GLGTNSSEAT KLWAASEILV TQHSKTSFDP CS

Arabidopsis Description

AT4g24050/T19F6_40 [Source:UniProtKB/TrEMBL;Acc:O22985]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.