Factsheet for Bra012248.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000871.1-P
Bra004879.1-P
Bra006453.1-P
Bra010996.1-P
Bra012474.1-P
Bra013757.1-P
Bra013840.1-P
Bra018537.1-P
Bra019205.1-P
Bra019248.1-P
Bra024741.1-P
Bra035030.1-P
Bra036253.1-P
Bra039992.1-P
Bra040332.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20770.1	Bra010996.1-P	AT1G25490.1	21798944
AT1G20770.1	Bra012474.1-P	AT1G25490.1	21798944
AT1G20770.1	Bra024741.1-P	AT1G25490.1	21798944
AT1G20770.1	Bra035030.1-P	AT1G25490.1	21798944
AT1G20770.1	Bra039992.1-P	AT1G25490.1	21798944
AT1G20770.1	Bra004879.1-P	AT2G44950.1	21798944
AT1G20770.1	Bra040332.1-P	AT2G44950.1	21798944
AT1G20770.1	Bra000871.1-P	AT4G02620.1	21798944
AT1G20770.1	Bra018537.1-P	AT4G02620.1	21798944
AT1G20770.1	Bra036253.1-P	AT4G02620.1	21798944
AT1G20770.1	Bra013757.1-P	AT4G24050.1	21798944
AT1G20770.1	Bra019248.1-P	AT4G24050.1	21798944
AT1G20770.1	Bra006453.1-P	AT4G24840.1	21798944
AT1G20770.1	Bra013840.1-P	AT4G24840.1	21798944
AT1G20770.1	Bra019205.1-P	AT4G24840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY01355	Canola	cytosol	100.0	100.0
AT1G20770.1	Thale cress	nucleus	79.45	80.93
Bra016454.1-P	Field mustard	cytosol	76.71	78.5
KRG95442	Soybean	cytosol	33.33	51.41
Zm00001d003071_P001	Maize	cytosol	47.03	45.58
GSMUA_Achr1P03500_001	Banana	nucleus	45.66	45.45
KRH67118	Soybean	nucleus	41.55	44.39
VIT_18s0122g01060.t01	Wine grape	nucleus	46.12	43.91
OQU81934	Sorghum	cytosol	44.75	43.56
Os04t0509200-01	Rice	cytosol	44.29	42.73
HORVU2Hr1G088210.1	Barley	cytosol, nucleus, plastid	43.84	42.29
TraesCS2D01G362600.1	Wheat	nucleus	42.92	41.59
TraesCS2B01G383200.1	Wheat	nucleus	42.92	41.41
TraesCS2A01G364600.1	Wheat	cytosol	42.47	40.97
PGSC0003DMT400003346	Potato	nucleus	40.64	40.83
TraesCS1D01G288900.1	Wheat	nucleus	41.1	40.54
TraesCS1A01G290300.1	Wheat	cytosol	42.01	40.35
Solyc02g087940.2.1	Tomato	nucleus	29.68	35.33
TraesCS1B01G299500.1	Wheat	plasma membrane	35.62	26.8

Protein Annotations

EnsemblPlants:Bra012248.1	EnsemblPlants:Bra012248.1-P	EnsemblPlantsGene:Bra012248	PANTHER:PTHR31996	SEG:seg	UniParc:UPI0002541589
UniProt:M4D6Y8	MapMan:35.2	:	:	:	:

Description

AT1G20770 (E=6e-077) | unknown protein

Coordinates

chrA07:+:9090309..9091748

Molecular Weight (calculated)

23774.8 Da

IEP (calculated)

4.501

GRAVY (calculated)

-0.505

Length

219 amino acids

Sequence
(BLAST)

001: MAGDEGTEVY EEGEDSIDVN NEVELEKEGG GGDEKVLQFL DSLDEYLTLM DSLNSKLRDG WFDLASARHS MGTLRINSTL LDLKFHPAAS TLQVTEQDVE
101: SLGSVPRFAL SKWASKGGSG KGKDFSTDAG SEIGSPRTPQ LRHRGGVSEE KPSAMGETVL AADEEVKRER EKSLSVFGGL VSPKLRGAQL SFETALETLV
201: EIANTRSSML TAFERITKK

Best Arabidopsis Sequence Match ( AT1G20770.1 )
(BLAST)

001: MAEIYEEGDE SVDVNKESEV KTELGKGGGD ENVLQFLDSL DGYLTLMDSV NSKLREGWFD LASARHSMGT LRINSTLLDL KYHPASSTLQ VTDQDVESLG
101: SVPHFALSKW ASKGGSRKGK DFSTDTDSEI GSPLSPQLRH RGVSEEKPSA KDETVLAADE EIKKERAKSL SVFGGLVSPK LRGAQQSFET ALETLVEIAN
201: MRASMISAFE RITEK

Arabidopsis Description

At1g20770 [Source:UniProtKB/TrEMBL;Acc:Q9LM77]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.