Factsheet for VIT_18s0122g01060.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g02190.t01
VIT_05s0062g00210.t01
VIT_15s0021g02140.t01
VIT_17s0000g01560.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20770.1	VIT_15s0021g02140.t01	AT2G44950.1	21798944
AT1G20770.1	VIT_05s0062g00210.t01	AT4G02620.1	21798944
AT1G20770.1	VIT_02s0025g02190.t01	AT4G24050.1	21798944
AT1G20770.1	VIT_17s0000g01560.t01	AT4G24840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P03500_001	Banana	nucleus	52.17	54.55
KRG95442	Soybean	cytosol	31.3	50.7
AT1G20770.1	Thale cress	nucleus	43.91	46.98
PGSC0003DMT400003346	Potato	nucleus	43.91	46.33
Bra012248.1-P	Field mustard	cytosol	43.91	46.12
CDY31868	Canola	cytosol	43.91	46.12
CDY01355	Canola	cytosol	43.91	46.12
KRH67118	Soybean	nucleus	40.87	45.85
CDY33645	Canola	nucleus	42.61	45.79
Bra016454.1-P	Field mustard	cytosol	42.61	45.79
TraesCS2D01G362600.1	Wheat	nucleus	43.91	44.69
HORVU2Hr1G088210.1	Barley	cytosol, nucleus, plastid	43.91	44.49
TraesCS2A01G364600.1	Wheat	cytosol	43.91	44.49
CDX96624	Canola	nucleus	36.96	44.27
TraesCS2B01G383200.1	Wheat	nucleus	43.48	44.05
TraesCS1D01G288900.1	Wheat	nucleus	42.17	43.69
TraesCS1A01G290300.1	Wheat	cytosol	43.04	43.42
Os04t0509200-01	Rice	cytosol	41.3	41.85
Zm00001d003071_P001	Maize	cytosol	40.0	40.71
OQU81934	Sorghum	cytosol	39.57	40.44
Solyc02g087940.2.1	Tomato	nucleus	30.87	38.59
TraesCS1B01G299500.1	Wheat	plasma membrane	37.83	29.9

Protein Annotations

EntrezGene:100263247	wikigene:100263247	MapMan:35.2	EMBL:AM427930	ProteinID:CAN80128	ProteinID:CAN80128.1
ProteinID:CBI40735	ProteinID:CBI40735.3	UniProt:D7UDC0	EMBL:FN596759	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0016020	GO:GO:0042406	GO:GO:0051082	EntrezGene:LOC100263247	wikigene:LOC100263247	PANTHER:PTHR31996
UniParc:UPI000198517E	ArrayExpress:VIT_18s0122g01060	EnsemblPlantsGene:VIT_18s0122g01060	EnsemblPlants:VIT_18s0122g01060.t01	RefSeq:XP_002273059	RefSeq:XP_002273059.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr18:+:745960..749094

Molecular Weight (calculated)

25561.7 Da

IEP (calculated)

4.511

GRAVY (calculated)

-0.612

Length

230 amino acids

Sequence
(BLAST)

001: MEDQDKARTC ENQLEEEQLD EEENVVTFLD SMDAYLTLID SLSSTLRQGW LELASARHSM GASRISSSLF DLKLHSAATS LRVTEDDVDS KMNQPHFTLC
101: KWASSDNGKC CSGEAKFDGD ELQKKSVSSQ LRYRGTSQFD EPQEIQEKSP TCKSPTSNGS PLSLDSPVQK QRHKSLSVFG TLVSPKLRAA QFSFETALET
201: IVEIANMRSS MLSAFDQVQK DIESISTGEQ

Best Arabidopsis Sequence Match ( AT1G20770.1 )
(BLAST)

001: MAEIYEEGDE SVDVNKESEV KTELGKGGGD ENVLQFLDSL DGYLTLMDSV NSKLREGWFD LASARHSMGT LRINSTLLDL KYHPASSTLQ VTDQDVESLG
101: SVPHFALSKW ASKGGSRKGK DFSTDTDSEI GSPLSPQLRH RGVSEEKPSA KDETVLAADE EIKKERAKSL SVFGGLVSPK LRGAQQSFET ALETLVEIAN
201: MRASMISAFE RITEK

Arabidopsis Description

At1g20770 [Source:UniProtKB/TrEMBL;Acc:Q9LM77]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.