Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY33645 | Canola | nucleus | 80.47 | 80.84 |
| CDY01355 | Canola | cytosol | 80.93 | 79.45 |
| Bra012248.1-P | Field mustard | cytosol | 80.93 | 79.45 |
| CDY31868 | Canola | cytosol | 80.0 | 78.54 |
| Bra016454.1-P | Field mustard | cytosol | 75.35 | 75.7 |
| CDX96624 | Canola | nucleus | 66.98 | 75.0 |
| KRG95442 | Soybean | cytosol | 32.09 | 48.59 |
| VIT_18s0122g01060.t01 | Wine grape | nucleus | 46.98 | 43.91 |
| Zm00001d003071_P001 | Maize | cytosol | 45.12 | 42.92 |
| GSMUA_Achr1P03500_001 | Banana | nucleus | 43.72 | 42.73 |
| KRH67118 | Soybean | nucleus | 40.0 | 41.95 |
| Os04t0509200-01 | Rice | cytosol | 44.19 | 41.85 |
| PGSC0003DMT400003346 | Potato | nucleus | 42.33 | 41.74 |
| HORVU2Hr1G088210.1 | Barley | cytosol, nucleus, plastid | 43.72 | 41.41 |
| OQU81934 | Sorghum | cytosol | 42.79 | 40.89 |
| TraesCS2D01G362600.1 | Wheat | nucleus | 42.33 | 40.27 |
| TraesCS2B01G383200.1 | Wheat | nucleus | 41.86 | 39.65 |
| TraesCS1D01G288900.1 | Wheat | nucleus | 40.93 | 39.64 |
| TraesCS2A01G364600.1 | Wheat | cytosol | 41.4 | 39.21 |
| TraesCS1A01G290300.1 | Wheat | cytosol | 40.93 | 38.6 |
| Solyc02g087940.2.1 | Tomato | nucleus | 29.3 | 34.24 |
| TraesCS1B01G299500.1 | Wheat | plasma membrane | 35.35 | 26.12 |
Protein Annotations
| MapMan:35.2 | EntrezGene:838667 | UniProt:A0A178WF12 | ProteinID:AAF80632.1 | ProteinID:AEE30020.1 | ArrayExpress:AT1G20770 |
| EnsemblPlantsGene:AT1G20770 | RefSeq:AT1G20770 | TAIR:AT1G20770 | RefSeq:AT1G20770-TAIR-G | EnsemblPlants:AT1G20770.1 | TAIR:AT1G20770.1 |
| EMBL:BT010712 | EMBL:BT011510 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0042406 | GO:GO:0051082 | RefSeq:NP_173500.1 | ProteinID:OAP16958.1 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PANTHER:PTHR31996 | UniProt:Q9LM77 | UniParc:UPI00000A4265 | : | : | : |
Description
At1g20770 [Source:UniProtKB/TrEMBL;Acc:Q9LM77]
Coordinates
chr1:-:7215015..7216897
Molecular Weight (calculated)
23501.5 Da
IEP (calculated)
4.660
GRAVY (calculated)
-0.515
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEIYEEGDE SVDVNKESEV KTELGKGGGD ENVLQFLDSL DGYLTLMDSV NSKLREGWFD LASARHSMGT LRINSTLLDL KYHPASSTLQ VTDQDVESLG
101: SVPHFALSKW ASKGGSRKGK DFSTDTDSEI GSPLSPQLRH RGVSEEKPSA KDETVLAADE EIKKERAKSL SVFGGLVSPK LRGAQQSFET ALETLVEIAN
201: MRASMISAFE RITEK
101: SVPHFALSKW ASKGGSRKGK DFSTDTDSEI GSPLSPQLRH RGVSEEKPSA KDETVLAADE EIKKERAKSL SVFGGLVSPK LRGAQQSFET ALETLVEIAN
201: MRASMISAFE RITEK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.