Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG95442 | Soybean | cytosol | 63.41 | 91.55 |
| CDY33645 | Canola | nucleus | 44.88 | 42.99 |
| Bra016454.1-P | Field mustard | cytosol | 43.9 | 42.06 |
| CDY31868 | Canola | cytosol | 44.88 | 42.01 |
| Bra012248.1-P | Field mustard | cytosol | 44.39 | 41.55 |
| CDY01355 | Canola | cytosol | 44.39 | 41.55 |
| VIT_18s0122g01060.t01 | Wine grape | nucleus | 45.85 | 40.87 |
| CDX96624 | Canola | nucleus | 38.05 | 40.62 |
| AT1G20770.1 | Thale cress | nucleus | 41.95 | 40.0 |
| GSMUA_Achr1P03500_001 | Banana | nucleus | 40.98 | 38.18 |
| PGSC0003DMT400003346 | Potato | nucleus | 40.49 | 38.07 |
| TraesCS2B01G383200.1 | Wheat | nucleus | 41.46 | 37.44 |
| TraesCS2D01G362600.1 | Wheat | nucleus | 40.98 | 37.17 |
| HORVU2Hr1G088210.1 | Barley | cytosol, nucleus, plastid | 40.98 | 37.0 |
| TraesCS2A01G364600.1 | Wheat | cytosol | 40.49 | 36.56 |
| OQU81934 | Sorghum | cytosol | 40.0 | 36.44 |
| TraesCS1A01G290300.1 | Wheat | cytosol | 40.49 | 36.4 |
| Zm00001d003071_P001 | Maize | cytosol | 40.0 | 36.28 |
| TraesCS1D01G288900.1 | Wheat | nucleus | 39.02 | 36.04 |
| Os04t0509200-01 | Rice | cytosol | 38.54 | 34.8 |
| Solyc02g087940.2.1 | Tomato | nucleus | 28.78 | 32.07 |
| TraesCS1B01G299500.1 | Wheat | plasma membrane | 36.1 | 25.43 |
Protein Annotations
| EMBL:ACUP02002034 | EnsemblPlants:KRH67118 | EnsemblPlantsGene:GLYMA_03G148200 | EntrezGene:100306518 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 |
| GO:GO:0016020 | GO:GO:0042406 | GO:GO:0051082 | PANTHER:PTHR31996 | ProteinID:KRH67117.1 | ProteinID:KRH67118 |
| ProteinID:KRH67118.1 | SEG:seg | UniParc:UPI00023C1AA2 | UniProt:I1JNP4 | MapMan:35.2 | : |
Description
hypothetical protein
Coordinates
chr3:-:36370700..36374201
Molecular Weight (calculated)
23122.9 Da
IEP (calculated)
4.585
GRAVY (calculated)
-0.639
Length
205 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEEHQCSRS GEEPQTQELD GEDQQLQHQC QQPGAEEKLV LQFMDSMDNY LSLFDVVSST LRQGWFDLAS ARHSMGASRI NSSLLDLKLH SAATTLKITN
101: YDGTQPRFML HKWVSSEHES TQLEDENVQS QDSSSVKSSG LADNAEVQNE RSKSLSVFGV LISPKLRASQ LSFEKALETL IEIANLQKSL LYSFHQLQKV
201: EDTKE
101: YDGTQPRFML HKWVSSEHES TQLEDENVQS QDSSSVKSSG LADNAEVQNE RSKSLSVFGV LISPKLRASQ LSFEKALETL IEIANLQKSL LYSFHQLQKV
201: EDTKE
001: MAEIYEEGDE SVDVNKESEV KTELGKGGGD ENVLQFLDSL DGYLTLMDSV NSKLREGWFD LASARHSMGT LRINSTLLDL KYHPASSTLQ VTDQDVESLG
101: SVPHFALSKW ASKGGSRKGK DFSTDTDSEI GSPLSPQLRH RGVSEEKPSA KDETVLAADE EIKKERAKSL SVFGGLVSPK LRGAQQSFET ALETLVEIAN
201: MRASMISAFE RITEK
101: SVPHFALSKW ASKGGSRKGK DFSTDTDSEI GSPLSPQLRH RGVSEEKPSA KDETVLAADE EIKKERAKSL SVFGGLVSPK LRGAQQSFET ALETLVEIAN
201: MRASMISAFE RITEK
Arabidopsis Description
At1g20770 [Source:UniProtKB/TrEMBL;Acc:Q9LM77]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.