Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G288900.1 | Wheat | nucleus | 81.58 | 83.78 |
| TraesCS2A01G364600.1 | Wheat | cytosol | 78.95 | 79.3 |
| Os04t0509200-01 | Rice | cytosol | 67.11 | 67.4 |
| OQU81934 | Sorghum | cytosol | 64.04 | 64.89 |
| Zm00001d003071_P001 | Maize | cytosol | 63.16 | 63.72 |
| TraesCS1B01G299500.1 | Wheat | plasma membrane | 74.56 | 58.42 |
| GSMUA_Achr1P03500_001 | Banana | nucleus | 47.37 | 49.09 |
| KRG95442 | Soybean | cytosol | 28.51 | 45.77 |
| VIT_18s0122g01060.t01 | Wine grape | nucleus | 43.42 | 43.04 |
| Bra012248.1-P | Field mustard | cytosol | 40.35 | 42.01 |
| CDY31868 | Canola | cytosol | 40.35 | 42.01 |
| CDY01355 | Canola | cytosol | 40.35 | 42.01 |
| CDY33645 | Canola | nucleus | 39.04 | 41.59 |
| Bra016454.1-P | Field mustard | cytosol | 38.6 | 41.12 |
| AT1G20770.1 | Thale cress | nucleus | 38.6 | 40.93 |
| KRH67118 | Soybean | nucleus | 36.4 | 40.49 |
| PGSC0003DMT400003346 | Potato | nucleus | 37.72 | 39.45 |
| CDX96624 | Canola | nucleus | 32.89 | 39.06 |
| Solyc02g087940.2.1 | Tomato | nucleus | 28.51 | 35.33 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G290300.1 | EnsemblPlantsGene:TraesCS1A01G290300 | PANTHER:PTHR31996 | SEG:seg | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr1A:-:486954570..486956845
Molecular Weight (calculated)
24626.8 Da
IEP (calculated)
4.855
GRAVY (calculated)
-0.333
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MATGAEVLRH MGPDRRVEQV EDITNAAAAA AEELGGDDEE ILRFMDSADG YLLLMDSLSV ALRQGWLDLA SARHSMGASR VSSVLFDHKE QSAATMLQVD
101: YSADLQPSES KPHFALSKWC LQEESSSSGV ICVQDGTKPK LRYRGSEATP GDGSRESDAS TAKSSTGVDI SNQVQSARSK ELSVFGKLVS PKLRTTQVSF
201: ETALELIVEL ANSRSTMLSS FSQIKCRS
101: YSADLQPSES KPHFALSKWC LQEESSSSGV ICVQDGTKPK LRYRGSEATP GDGSRESDAS TAKSSTGVDI SNQVQSARSK ELSVFGKLVS PKLRTTQVSF
201: ETALELIVEL ANSRSTMLSS FSQIKCRS
001: MAEIYEEGDE SVDVNKESEV KTELGKGGGD ENVLQFLDSL DGYLTLMDSV NSKLREGWFD LASARHSMGT LRINSTLLDL KYHPASSTLQ VTDQDVESLG
101: SVPHFALSKW ASKGGSRKGK DFSTDTDSEI GSPLSPQLRH RGVSEEKPSA KDETVLAADE EIKKERAKSL SVFGGLVSPK LRGAQQSFET ALETLVEIAN
201: MRASMISAFE RITEK
101: SVPHFALSKW ASKGGSRKGK DFSTDTDSEI GSPLSPQLRH RGVSEEKPSA KDETVLAADE EIKKERAKSL SVFGGLVSPK LRGAQQSFET ALETLVEIAN
201: MRASMISAFE RITEK
Arabidopsis Description
At1g20770 [Source:UniProtKB/TrEMBL;Acc:Q9LM77]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.