Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96624 | Canola | nucleus | 78.97 | 88.02 |
| CDY01355 | Canola | cytosol | 83.64 | 81.74 |
| CDY31868 | Canola | cytosol | 83.18 | 81.28 |
| AT1G20770.1 | Thale cress | nucleus | 80.84 | 80.47 |
| KRG95442 | Soybean | cytosol | 32.24 | 48.59 |
| KRH67118 | Soybean | nucleus | 42.99 | 44.88 |
| GSMUA_Achr1P03500_001 | Banana | nucleus | 44.86 | 43.64 |
| Os04t0509200-01 | Rice | cytosol | 45.79 | 43.17 |
| HORVU2Hr1G088210.1 | Barley | cytosol, nucleus, plastid | 45.33 | 42.73 |
| VIT_18s0122g01060.t01 | Wine grape | nucleus | 45.79 | 42.61 |
| Zm00001d003071_P001 | Maize | cytosol | 44.86 | 42.48 |
| TraesCS2D01G362600.1 | Wheat | nucleus | 44.39 | 42.04 |
| TraesCS2B01G383200.1 | Wheat | nucleus | 43.93 | 41.41 |
| OQU81934 | Sorghum | cytosol | 43.46 | 41.33 |
| PGSC0003DMT400003346 | Potato | nucleus | 42.06 | 41.28 |
| TraesCS2A01G364600.1 | Wheat | cytosol | 42.99 | 40.53 |
| TraesCS1D01G288900.1 | Wheat | nucleus | 40.65 | 39.19 |
| TraesCS1A01G290300.1 | Wheat | cytosol | 41.59 | 39.04 |
| Solyc02g087940.2.1 | Tomato | nucleus | 29.44 | 34.24 |
| TraesCS1B01G299500.1 | Wheat | plasma membrane | 36.45 | 26.8 |
Protein Annotations
| EnsemblPlants:CDY33645 | EnsemblPlantsGene:GSBRNA2T00054996001 | PANTHER:PTHR31996 | ProteinID:CDY33645 | ProteinID:CDY33645.1 | SEG:seg |
| UniParc:UPI0004EDED6D | UniProt:A0A078H4Y2 | MapMan:35.2 | : | : | : |
Description
BnaC08g19450DBnaC08g19450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H4Y2]
Coordinates
chrLK032319:-:173117..174449
Molecular Weight (calculated)
23257.4 Da
IEP (calculated)
4.756
GRAVY (calculated)
-0.444
Length
214 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGAEEIEIC EEGEESIEAE AKTERGDEKV LQFLDSLDGY LTLMDSLNSK LREGWFDLAS ARHSMGTLRI NTTLLDLKDH SASSTLQVTD QEVESLGSVP
101: RFALSKWASK GGSGKGKDFS TVADSEMGSP RSPQLRHRGF AEEKPSAKGE TVLAADEDAE IKKERAKSLS VFGGLVSPKL RGAQLSFETA LETLVEIANT
201: RAAMLTAFER ITKK
101: RFALSKWASK GGSGKGKDFS TVADSEMGSP RSPQLRHRGF AEEKPSAKGE TVLAADEDAE IKKERAKSLS VFGGLVSPKL RGAQLSFETA LETLVEIANT
201: RAAMLTAFER ITKK
001: MAEIYEEGDE SVDVNKESEV KTELGKGGGD ENVLQFLDSL DGYLTLMDSV NSKLREGWFD LASARHSMGT LRINSTLLDL KYHPASSTLQ VTDQDVESLG
101: SVPHFALSKW ASKGGSRKGK DFSTDTDSEI GSPLSPQLRH RGVSEEKPSA KDETVLAADE EIKKERAKSL SVFGGLVSPK LRGAQQSFET ALETLVEIAN
201: MRASMISAFE RITEK
101: SVPHFALSKW ASKGGSRKGK DFSTDTDSEI GSPLSPQLRH RGVSEEKPSA KDETVLAADE EIKKERAKSL SVFGGLVSPK LRGAQQSFET ALETLVEIAN
201: MRASMISAFE RITEK
Arabidopsis Description
At1g20770 [Source:UniProtKB/TrEMBL;Acc:Q9LM77]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.