CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX96624
CDY01355
CDY31868
CDY33645
CDY39879

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02620.1	CDX96624	AT1G20770.1	21798944
AT4G02620.1	CDY01355	AT1G20770.1	21798944
AT4G02620.1	CDY31868	AT1G20770.1	21798944
AT4G02620.1	CDY33645	AT1G20770.1	21798944
AT4G02620.1	CDY39879	AT2G25000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90929	Canola	cytosol	99.22	99.22
CDY21901	Canola	cytosol	99.22	99.22
CDY22067	Canola	cytosol	99.22	99.22
AT4G02620.1	Thale cress	cytosol	96.09	96.09
CDX91295	Canola	endoplasmic reticulum	98.44	89.36
VIT_05s0062g00210.t01	Wine grape	cytosol	86.72	85.38
Solyc02g068450.2.1	Tomato	cytosol, plastid	75.78	85.09
KRH42449	Soybean	cytosol	85.94	84.62
KRH58554	Soybean	cytosol	85.94	84.62
GSMUA_Achr1P15220_001	Banana	cytosol	85.16	83.85
EES06054	Sorghum	cytosol	85.16	83.85
EER97697	Sorghum	cytosol	85.16	83.85
PGSC0003DMT400024361	Potato	cytosol	84.38	83.08
Zm00001d007118_P003	Maize	cytosol	84.38	83.08
GSMUA_Achr1P17510_001	Banana	cytosol	83.59	82.31
Os02t0824700-01	Rice	nucleus, plasma membrane	83.59	82.31
Os04t0137500-00	Rice	cytosol	83.59	82.31
HORVU3Hr1G047510.1	Barley	vacuole	82.81	81.54
TraesCS3A01G201100.1	Wheat	unclear	82.81	81.54
TraesCS3B01G224800.1	Wheat	cytosol	82.81	81.54
TraesCS3D01G204000.1	Wheat	cytosol	82.81	81.54

Protein Annotations

MapMan:24.1.1.2.6	Gene3D:3.40.50.10580	GO:A0A078FU19	UniProt:A0A078FU19	InterPro:ATPase_V1-cplx_f_g_su	InterPro:ATPase_V1-cplx_fsu_euk
InterPro:ATPase_V1_fsu_sf	EnsemblPlants:CDY18010	ProteinID:CDY18010	ProteinID:CDY18010.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0015991
GO:GO:0015992	GO:GO:0016020	GO:GO:0016787	GO:GO:0033180	GO:GO:0034220	GO:GO:0046961
EnsemblPlantsGene:GSBRNA2T00002397001	InterPro:IPR036906	PFAM:PF01990	PIRSF:PIRSF015945	PANTHER:PTHR13861	PANTHER:PTHR13861:SF6
SUPFAM:SSF159468	TIGRFAMs:TIGR01101	UniParc:UPI0004EEC43A	:	:	:

Description

BnaC03g30820DV-type proton ATPase subunit F [Source:UniProtKB/TrEMBL;Acc:A0A078FU19]

Coordinates

chrLK032080:+:511225..512934

Molecular Weight (calculated)

14264.1 Da

IEP (calculated)

6.531

GRAVY (calculated)

-0.027

Length

128 amino acids

Sequence
(BLAST)

001: MAGRASIPAR NSALIAMIAD EDTVVGFLMA GVGNVDIRRK TNYLIVDSKT TVRQIEDSFK EFSSRDDIAI ILISQYVANM IRFLVDSYNK PVPAILEIPS
101: KDHPYDPAHD SVLSRVKYLF SAESVSQR

Best Arabidopsis Sequence Match ( AT4G02620.1 )
(BLAST)

001: MAGRATIPAR NSALIAMIAD EDTVVGFLMA GVGNVDIRRK TNYLIVDSKT TVRQIEDAFK EFSARDDIAI ILLSQYIANM IRFLVDSYNK PVPAILEIPS
101: KDHPYDPAHD SVLSRVKYLF SAESVSQR

Arabidopsis Description

VHA-FV-type proton ATPase subunit F [Source:UniProtKB/TrEMBL;Acc:A0A178V4M8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.