Factsheet for Solyc02g068450.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 3
plastid 1

Predictors

GFP

MS/MS

Papers

plastid: 26371478

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g087940.2.1
Solyc06g073150.2.1
Solyc08g067340.2.1
Solyc08g067360.2.1
Solyc11g017300.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02620.1	Solyc02g087940.2.1	AT1G20770.1	21798944
AT4G02620.1	Solyc06g073150.2.1	AT1G71230.1	21798944
AT4G02620.1	Solyc11g017300.1.1	AT1G71230.1	21798944
AT4G02620.1	Solyc08g067340.2.1	AT2G25000.1	21798944
AT4G02620.1	Solyc08g067360.2.1	AT2G25000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018537.1-P	Field mustard	cytosol	38.6	89.8
PGSC0003DMT400024361	Potato	cytosol	99.12	86.92
VIT_05s0062g00210.t01	Wine grape	cytosol	94.74	83.08
Os04t0137500-00	Rice	cytosol	92.98	81.54
Os02t0824700-01	Rice	nucleus, plasma membrane	92.98	81.54
KRH58554	Soybean	cytosol	92.98	81.54
KRH42449	Soybean	cytosol	92.98	81.54
EES06054	Sorghum	cytosol	92.11	80.77
EER97697	Sorghum	cytosol	91.23	80.0
GSMUA_Achr1P17510_001	Banana	cytosol	90.35	79.23
Zm00001d007118_P003	Maize	cytosol	90.35	79.23
GSMUA_Achr1P15220_001	Banana	cytosol	90.35	79.23
HORVU3Hr1G047510.1	Barley	vacuole	89.47	78.46
TraesCS3A01G201100.1	Wheat	unclear	89.47	78.46
TraesCS3B01G224800.1	Wheat	cytosol	89.47	78.46
TraesCS3D01G204000.1	Wheat	cytosol	89.47	78.46
CDY22067	Canola	cytosol	85.96	76.56
CDY21901	Canola	cytosol	85.96	76.56
CDX90929	Canola	cytosol	85.96	76.56
Bra036253.1-P	Field mustard	cytosol	85.96	76.56
Bra000871.1-P	Field mustard	cytosol	85.96	76.56
CDY18010	Canola	cytosol	85.09	75.78
AT4G02620.1	Thale cress	cytosol	84.21	75.0
CDX91295	Canola	endoplasmic reticulum	85.09	68.79

Protein Annotations

MapMan:24.1.1.2.6	Gene3D:3.40.50.10580	InterPro:ATPase_V1-cplx_f_g_su	InterPro:ATPase_V1-cplx_fsu_euk	InterPro:ATPase_V1_fsu_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005773	GO:GO:0005774	GO:GO:0005794	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150
GO:GO:0015991	GO:GO:0016020	GO:GO:0016787	GO:GO:0033180	GO:GO:0034220	GO:GO:0042625
GO:GO:0046961	InterPro:IPR036906	UniProt:K4B7H7	PFAM:PF01990	PIRSF:PIRSF015945	PANTHER:PTHR13861
PANTHER:PTHR13861:SF6	SUPFAM:SSF159468	EnsemblPlantsGene:Solyc02g068450.2	EnsemblPlants:Solyc02g068450.2.1	TIGRFAMs:TIGR01101	UniParc:UPI0002767934

Description

No Description!

Coordinates

chr2:+:38395803..38400910

Molecular Weight (calculated)

12893.4 Da

IEP (calculated)

5.157

GRAVY (calculated)

-0.139

Length

114 amino acids

Sequence
(BLAST)

001: MIADEDTITG FLLAGVGNVD LRRKTNYLIV DSKTTVKQIE DAFKEFTTRE DIAIVLISQY VANMIRFLVD SYNKPIPAIL EIPSKDHPYD PAHDSVLSRV
101: KYLFSTESVA GDRR

Best Arabidopsis Sequence Match ( AT4G02620.1 )
(BLAST)

001: MAGRATIPAR NSALIAMIAD EDTVVGFLMA GVGNVDIRRK TNYLIVDSKT TVRQIEDAFK EFSARDDIAI ILLSQYIANM IRFLVDSYNK PVPAILEIPS
101: KDHPYDPAHD SVLSRVKYLF SAESVSQR

Arabidopsis Description

VHA-FV-type proton ATPase subunit F [Source:UniProtKB/TrEMBL;Acc:A0A178V4M8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.