Factsheet for Bra036253.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010220.1-P
Bra012248.1-P
Bra016454.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02620.1	Bra012248.1-P	AT1G20770.1	21798944
AT4G02620.1	Bra016454.1-P	AT1G20770.1	21798944
AT4G02620.1	Bra010220.1-P	AT2G25000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000871.1-P	Field mustard	cytosol	100.0	100.0
Bra018537.1-P	Field mustard	cytosol	38.28	100.0
CDY22067	Canola	cytosol	100.0	100.0
AT4G02620.1	Thale cress	cytosol	96.88	96.88
VIT_05s0062g00210.t01	Wine grape	cytosol	87.5	86.15
Solyc02g068450.2.1	Tomato	cytosol, plastid	76.56	85.96
KRH58554	Soybean	cytosol	86.72	85.38
KRH42449	Soybean	cytosol	86.72	85.38
GSMUA_Achr1P15220_001	Banana	cytosol	85.94	84.62
EES06054	Sorghum	cytosol	85.94	84.62
EER97697	Sorghum	cytosol	85.94	84.62
PGSC0003DMT400024361	Potato	cytosol	85.16	83.85
Zm00001d007118_P003	Maize	cytosol	85.16	83.85
GSMUA_Achr1P17510_001	Banana	cytosol	84.38	83.08
Os02t0824700-01	Rice	nucleus, plasma membrane	84.38	83.08
Os04t0137500-00	Rice	cytosol	84.38	83.08
HORVU3Hr1G047510.1	Barley	vacuole	83.59	82.31
TraesCS3A01G201100.1	Wheat	unclear	83.59	82.31
TraesCS3B01G224800.1	Wheat	cytosol	83.59	82.31
TraesCS3D01G204000.1	Wheat	cytosol	83.59	82.31

Protein Annotations

MapMan:24.1.1.2.6	Gene3D:3.40.50.10580	InterPro:ATPase_V1-cplx_f_g_su	InterPro:ATPase_V1-cplx_fsu_euk	InterPro:ATPase_V1_fsu_sf	EnsemblPlantsGene:Bra036253
EnsemblPlants:Bra036253.1	EnsemblPlants:Bra036253.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0015991	GO:GO:0015992	GO:GO:0016020
GO:GO:0016787	GO:GO:0033180	GO:GO:0034220	GO:GO:0046961	InterPro:IPR036906	UniProt:M4C9J2
PFAM:PF01990	PIRSF:PIRSF015945	PANTHER:PTHR13861	PANTHER:PTHR13861:SF6	SUPFAM:SSF159468	TIGRFAMs:TIGR01101
UniParc:UPI0001BA8DA8	:	:	:	:	:

Description

AT4G02620 (E=6e-066) | vacuolar ATPase subunit F family protein

Coordinates

chrA09:+:117914..119259

Molecular Weight (calculated)

14248.1 Da

IEP (calculated)

6.531

GRAVY (calculated)

-0.007

Length

128 amino acids

Sequence
(BLAST)

001: MAGRASIPAR NSALIAMIAD EDTVVGFLMA GVGNVDIRRK TNYLIVDSKT TVRQIEDAFK EFSSRDDIAI ILISQYVANM IRFLVDSYNK PVPAILEIPS
101: KDHPYDPAHD SVLSRVKYLF SAESVSQR

Best Arabidopsis Sequence Match ( AT4G02620.1 )
(BLAST)

001: MAGRATIPAR NSALIAMIAD EDTVVGFLMA GVGNVDIRRK TNYLIVDSKT TVRQIEDAFK EFSARDDIAI ILLSQYIANM IRFLVDSYNK PVPAILEIPS
101: KDHPYDPAHD SVLSRVKYLF SAESVSQR

Arabidopsis Description

VHA-FV-type proton ATPase subunit F [Source:UniProtKB/TrEMBL;Acc:A0A178V4M8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.