Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 2
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d007118_P003 | Maize | cytosol | 96.92 | 96.92 |
| EES06054 | Sorghum | cytosol | 94.62 | 94.62 |
| Bra018537.1-P | Field mustard | cytosol | 35.38 | 93.88 |
| TraesCS3D01G204000.1 | Wheat | cytosol | 93.85 | 93.85 |
| TraesCS3B01G224800.1 | Wheat | cytosol | 93.85 | 93.85 |
| TraesCS3A01G201100.1 | Wheat | unclear | 93.85 | 93.85 |
| HORVU3Hr1G047510.1 | Barley | vacuole | 93.85 | 93.85 |
| Solyc02g068450.2.1 | Tomato | cytosol, plastid | 80.0 | 91.23 |
| GSMUA_Achr1P15220_001 | Banana | cytosol | 90.0 | 90.0 |
| VIT_05s0062g00210.t01 | Wine grape | cytosol | 89.23 | 89.23 |
| PGSC0003DMT400024361 | Potato | cytosol | 89.23 | 89.23 |
| GSMUA_Achr1P17510_001 | Banana | cytosol | 88.46 | 88.46 |
| KRH42449 | Soybean | cytosol | 87.69 | 87.69 |
| KRH58554 | Soybean | cytosol | 87.69 | 87.69 |
| CDY22067 | Canola | cytosol | 84.62 | 85.94 |
| CDY21901 | Canola | cytosol | 84.62 | 85.94 |
| CDX90929 | Canola | cytosol | 84.62 | 85.94 |
| Bra036253.1-P | Field mustard | cytosol | 84.62 | 85.94 |
| Bra000871.1-P | Field mustard | cytosol | 84.62 | 85.94 |
| AT4G02620.1 | Thale cress | cytosol | 83.85 | 85.16 |
| CDY18010 | Canola | cytosol | 83.85 | 85.16 |
| CDX91295 | Canola | endoplasmic reticulum | 83.85 | 77.31 |
Protein Annotations
| MapMan:24.1.1.2.6 | Gene3D:3.40.50.10580 | EntrezGene:8074420 | InterPro:ATPase_V1-cplx_f_g_su | InterPro:ATPase_V1-cplx_fsu_euk | InterPro:ATPase_V1_fsu_sf |
| UniProt:C5X4W8 | ncoils:Coil | EnsemblPlants:EER97697 | ProteinID:EER97697 | ProteinID:EER97697.1 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006811 | GO:GO:0008150 |
| GO:GO:0015991 | GO:GO:0015992 | GO:GO:0016020 | GO:GO:0016787 | GO:GO:0033180 | GO:GO:0034220 |
| GO:GO:0042625 | GO:GO:0046961 | InterPro:IPR036906 | PFAM:PF01990 | PIRSF:PIRSF015945 | PANTHER:PTHR13861 |
| PANTHER:PTHR13861:SF6 | EnsemblPlantsGene:SORBI_3002G410700 | SUPFAM:SSF159468 | unigene:Sbi.229 | TIGRFAMs:TIGR01101 | UniParc:UPI0001A83565 |
| RefSeq:XP_002461176.1 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr2:+:75900148..75904461
Molecular Weight (calculated)
14447.3 Da
IEP (calculated)
5.740
GRAVY (calculated)
-0.078
Length
130 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGRASIPTN NSALIAIIAD EDTVTGFLMA GVGNVDLRKK TNYLLVDNKT TVKQIEDAFK EFTTREDIAI VLISQYIANM IRFLVDSYNK PVPAILEIPS
101: KDHPYDPAHD SVLSRVKYLF SAESVASDRR
101: KDHPYDPAHD SVLSRVKYLF SAESVASDRR
001: MAGRATIPAR NSALIAMIAD EDTVVGFLMA GVGNVDIRRK TNYLIVDSKT TVRQIEDAFK EFSARDDIAI ILLSQYIANM IRFLVDSYNK PVPAILEIPS
101: KDHPYDPAHD SVLSRVKYLF SAESVSQR
101: KDHPYDPAHD SVLSRVKYLF SAESVSQR
Arabidopsis Description
VHA-FV-type proton ATPase subunit F [Source:UniProtKB/TrEMBL;Acc:A0A178V4M8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.