Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra010220.1-P | |
| Bra012248.1-P | |
| Bra016454.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G02620.1 | Bra012248.1-P | AT1G20770.1 | 21798944 |
| AT4G02620.1 | Bra016454.1-P | AT1G20770.1 | 21798944 |
| AT4G02620.1 | Bra010220.1-P | AT2G25000.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g068450.2.1 | Tomato | cytosol, plastid | 89.8 | 38.6 |
| Bra000871.1-P | Field mustard | cytosol | 100.0 | 38.28 |
| Bra036253.1-P | Field mustard | cytosol | 100.0 | 38.28 |
| AT4G02620.1 | Thale cress | cytosol | 100.0 | 38.28 |
| Zm00001d007118_P003 | Maize | cytosol | 93.88 | 35.38 |
| VIT_05s0062g00210.t01 | Wine grape | cytosol | 93.88 | 35.38 |
| EER97697 | Sorghum | cytosol | 93.88 | 35.38 |
| CDX91295 | Canola | endoplasmic reticulum | 100.0 | 34.75 |
| GSMUA_Achr1P15220_001 | Banana | cytosol | 91.84 | 34.62 |
| GSMUA_Achr1P17510_001 | Banana | cytosol | 91.84 | 34.62 |
| Os02t0824700-01 | Rice | nucleus, plasma membrane | 91.84 | 34.62 |
| Os04t0137500-00 | Rice | cytosol | 91.84 | 34.62 |
| PGSC0003DMT400024361 | Potato | cytosol | 91.84 | 34.62 |
| EES06054 | Sorghum | cytosol | 91.84 | 34.62 |
| KRH42449 | Soybean | cytosol | 89.8 | 33.85 |
| KRH58554 | Soybean | cytosol | 89.8 | 33.85 |
| HORVU3Hr1G047510.1 | Barley | vacuole | 87.76 | 33.08 |
| TraesCS3A01G201100.1 | Wheat | unclear | 87.76 | 33.08 |
| TraesCS3B01G224800.1 | Wheat | cytosol | 87.76 | 33.08 |
| TraesCS3D01G204000.1 | Wheat | cytosol | 87.76 | 33.08 |
Protein Annotations
| EnsemblPlants:Bra018537.1 | EnsemblPlants:Bra018537.1-P | EnsemblPlantsGene:Bra018537 | Gene3D:3.40.50.10580 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0034220 | InterPro:ATPase_V1-cplx_f_g_su | InterPro:ATPase_V1_fsu_sf | InterPro:IPR036906 | PANTHER:PTHR13861 | PANTHER:PTHR13861:SF6 |
| PFAM:PF01990 | UniParc:UPI0002547322 | UniProt:M4DPU6 | MapMan:24.1.1.2.6 | : | : |
Description
AT4G02620 (E=7e-023) | vacuolar ATPase subunit F family protein
Coordinates
chrA05:+:9051357..9051506
Molecular Weight (calculated)
5617.7 Da
IEP (calculated)
7.688
GRAVY (calculated)
-0.296
Length
49 amino acids
Sequence
(BLAST)
(BLAST)
1: MIRFLVDSYN KPVPAILEIP SKDHPYDPAH DSVLSRVKYL FSAESVSQR
001: MAGRATIPAR NSALIAMIAD EDTVVGFLMA GVGNVDIRRK TNYLIVDSKT TVRQIEDAFK EFSARDDIAI ILLSQYIANM IRFLVDSYNK PVPAILEIPS
101: KDHPYDPAHD SVLSRVKYLF SAESVSQR
101: KDHPYDPAHD SVLSRVKYLF SAESVSQR
Arabidopsis Description
VHA-FV-type proton ATPase subunit F [Source:UniProtKB/TrEMBL;Acc:A0A178V4M8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.