CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 3
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88729
EER90124
EER98905
EES04642
KXG27287
KXG35639
OQU81934

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02620.1	OQU81934	AT1G20770.1	21798944
AT4G02620.1	KXG27287	AT1G71230.1	21798944
AT4G02620.1	EER88729	AT2G25000.1	21798944
AT4G02620.1	EER90124	AT2G25000.1	21798944
AT4G02620.1	EER98905	AT2G25000.1	21798944
AT4G02620.1	EES04642	AT2G25000.1	21798944
AT4G02620.1	KXG35639	AT2G25000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0137500-00	Rice	cytosol	94.62	94.62
Os02t0824700-01	Rice	nucleus, plasma membrane	94.62	94.62
EER97697	Sorghum	cytosol	94.62	94.62
Solyc02g068450.2.1	Tomato	cytosol, plastid	80.77	92.11
Bra018537.1-P	Field mustard	cytosol	34.62	91.84
VIT_05s0062g00210.t01	Wine grape	cytosol	90.77	90.77
PGSC0003DMT400024361	Potato	cytosol	90.77	90.77
GSMUA_Achr1P17510_001	Banana	cytosol	90.0	90.0
GSMUA_Achr1P15220_001	Banana	cytosol	89.23	89.23
KRH42449	Soybean	cytosol	89.23	89.23
KRH58554	Soybean	cytosol	89.23	89.23
CDY21901	Canola	cytosol	84.62	85.94
CDY22067	Canola	cytosol	84.62	85.94
CDX90929	Canola	cytosol	84.62	85.94
Bra036253.1-P	Field mustard	cytosol	84.62	85.94
Bra000871.1-P	Field mustard	cytosol	84.62	85.94
CDY18010	Canola	cytosol	83.85	85.16
AT4G02620.1	Thale cress	cytosol	83.85	85.16
CDX91295	Canola	endoplasmic reticulum	83.85	77.31

Protein Annotations

MapMan:24.1.1.2.6	Gene3D:3.40.50.10580	EntrezGene:8055341	InterPro:ATPase_V1-cplx_f_g_su	InterPro:ATPase_V1-cplx_fsu_euk	InterPro:ATPase_V1_fsu_sf
UniProt:C5XWL8	EnsemblPlants:EES06054	ProteinID:EES06054	ProteinID:EES06054.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0015991
GO:GO:0015992	GO:GO:0016020	GO:GO:0016787	GO:GO:0033180	GO:GO:0034220	GO:GO:0042625
GO:GO:0046961	InterPro:IPR036906	PFAM:PF01990	PIRSF:PIRSF015945	PANTHER:PTHR13861	PANTHER:PTHR13861:SF6
EnsemblPlantsGene:SORBI_3004G352500	SUPFAM:SSF159468	unigene:Sbi.16499	TIGRFAMs:TIGR01101	UniParc:UPI00016FCEA5	RefSeq:XP_002453078.1

Description

hypothetical protein

Coordinates

chr4:+:68101898..68106149

Molecular Weight (calculated)

14382.2 Da

IEP (calculated)

5.740

GRAVY (calculated)

-0.058

Length

130 amino acids

Sequence
(BLAST)

001: MAGRANIPTN NSALIAIIAD EDTVTGFLLA GVGNVDLRKK TNYLIVDNKT TVKQIEDAFK EFTAREDIAI VLISQYVANM IRFLVDGYNK PVPAILEIPS
101: KDHPYDPAHD SVLSRVKYLF SAESVASDRR

Best Arabidopsis Sequence Match ( AT4G02620.1 )
(BLAST)

001: MAGRATIPAR NSALIAMIAD EDTVVGFLMA GVGNVDIRRK TNYLIVDSKT TVRQIEDAFK EFSARDDIAI ILLSQYIANM IRFLVDSYNK PVPAILEIPS
101: KDHPYDPAHD SVLSRVKYLF SAESVSQR

Arabidopsis Description

VHA-FV-type proton ATPase subunit F [Source:UniProtKB/TrEMBL;Acc:A0A178V4M8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.