Factsheet for PGSC0003DMT400024361

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400003346
PGSC0003DMT400019058
PGSC0003DMT400019061
PGSC0003DMT400023896
PGSC0003DMT400069203

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02620.1	PGSC0003DMT400003346	AT1G20770.1	21798944
AT4G02620.1	PGSC0003DMT400023896	AT1G71230.1	21798944
AT4G02620.1	PGSC0003DMT400069203	AT1G71230.1	21798944
AT4G02620.1	PGSC0003DMT400019058	AT2G25000.1	21798944
AT4G02620.1	PGSC0003DMT400019061	AT2G25000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g068450.2.1	Tomato	cytosol, plastid	86.92	99.12
Bra018537.1-P	Field mustard	cytosol	34.62	91.84
VIT_05s0062g00210.t01	Wine grape	cytosol	91.54	91.54
EES06054	Sorghum	cytosol	90.77	90.77
KRH58554	Soybean	cytosol	90.0	90.0
KRH42449	Soybean	cytosol	90.0	90.0
Os04t0137500-00	Rice	cytosol	89.23	89.23
Os02t0824700-01	Rice	nucleus, plasma membrane	89.23	89.23
EER97697	Sorghum	cytosol	89.23	89.23
GSMUA_Achr1P15220_001	Banana	cytosol	89.23	89.23
Zm00001d007118_P003	Maize	cytosol	88.46	88.46
GSMUA_Achr1P17510_001	Banana	cytosol	87.69	87.69
HORVU3Hr1G047510.1	Barley	vacuole	86.92	86.92
TraesCS3A01G201100.1	Wheat	unclear	86.92	86.92
TraesCS3B01G224800.1	Wheat	cytosol	86.92	86.92
TraesCS3D01G204000.1	Wheat	cytosol	86.92	86.92
CDY22067	Canola	cytosol	83.85	85.16
CDY21901	Canola	cytosol	83.85	85.16
CDX90929	Canola	cytosol	83.85	85.16
Bra036253.1-P	Field mustard	cytosol	83.85	85.16
Bra000871.1-P	Field mustard	cytosol	83.85	85.16
CDY18010	Canola	cytosol	83.08	84.38
AT4G02620.1	Thale cress	cytosol	82.31	83.59
CDX91295	Canola	endoplasmic reticulum	83.08	76.6

Protein Annotations

EntrezGene:102603935	MapMan:24.1.1.2.6	Gene3D:3.40.50.10580	InterPro:ATPase_V1-cplx_f_g_su	InterPro:ATPase_V1-cplx_fsu_euk	InterPro:ATPase_V1_fsu_sf
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0005794	GO:GO:0005886	GO:GO:0006810
GO:GO:0006811	GO:GO:0008150	GO:GO:0015991	GO:GO:0015992	GO:GO:0016020	GO:GO:0016787
GO:GO:0033180	GO:GO:0034220	GO:GO:0046961	InterPro:IPR036906	UniProt:M1AJZ7	PFAM:PF01990
EnsemblPlantsGene:PGSC0003DMG400009421	PGSC:PGSC0003DMG400009421	EnsemblPlants:PGSC0003DMT400024361	PIRSF:PIRSF015945	PANTHER:PTHR13861	PANTHER:PTHR13861:SF6
SUPFAM:SSF159468	TIGRFAMs:TIGR01101	UniParc:UPI000296AFE7	RefSeq:XP_006364993.1	RefSeq:XP_006364994.1	RefSeq:XP_006364995.1
RefSeq:XP_015159741.1	:	:	:	:	:

Description

Vacuolar ATP synthase subunit F [Source:PGSC_GENE;Acc:PGSC0003DMG400009421]

Coordinates

chr2:+:27162898..27169334

Molecular Weight (calculated)

14544.4 Da

IEP (calculated)

6.533

GRAVY (calculated)

-0.111

Length

130 amino acids

Sequence
(BLAST)

001: MANRAPVRTN NSALIAMIAD EDTITGFLLA GVGNVDLRRK TNYLIVDSKT TVKQIEDAFK EFTTREDIAI VLISQYVANM IRFLVDSYNK PIPAILEIPS
101: KDHPYDPAHD SVLSRVKYLF SAESVAGDRR

Best Arabidopsis Sequence Match ( AT4G02620.1 )
(BLAST)

001: MAGRATIPAR NSALIAMIAD EDTVVGFLMA GVGNVDIRRK TNYLIVDSKT TVRQIEDAFK EFSARDDIAI ILLSQYIANM IRFLVDSYNK PVPAILEIPS
101: KDHPYDPAHD SVLSRVKYLF SAESVSQR

Arabidopsis Description

VHA-FV-type proton ATPase subunit F [Source:UniProtKB/TrEMBL;Acc:A0A178V4M8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.