Factsheet for Os02t0824700-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

nucleus: 19621931
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0181300-01
Os04t0509200-01
Os04t0654700-02
Os06t0649000-01
Os09t0417600-02
Os09t0417800-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02620.1	Os04t0509200-01	AT1G20770.1	21798944
AT4G02620.1	Os04t0654700-02	AT1G71230.1	21798944
AT4G02620.1	Os02t0181300-01	AT2G25000.1	21798944
AT4G02620.1	Os06t0649000-01	AT2G25000.1	21798944
AT4G02620.1	Os09t0417600-02	AT2G25000.1	21798944
AT4G02620.1	Os09t0417800-01	AT2G25000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0137500-00	Rice	cytosol	100.0	100.0
EES06054	Sorghum	cytosol	94.62	94.62
Zm00001d007118_P003	Maize	cytosol	93.08	93.08
Solyc02g068450.2.1	Tomato	cytosol, plastid	81.54	92.98
Bra018537.1-P	Field mustard	cytosol	34.62	91.84
VIT_05s0062g00210.t01	Wine grape	cytosol	90.77	90.77
TraesCS3D01G204000.1	Wheat	cytosol	90.0	90.0
TraesCS3B01G224800.1	Wheat	cytosol	90.0	90.0
TraesCS3A01G201100.1	Wheat	unclear	90.0	90.0
HORVU3Hr1G047510.1	Barley	vacuole	90.0	90.0
PGSC0003DMT400024361	Potato	cytosol	89.23	89.23
KRH58554	Soybean	cytosol	88.46	88.46
KRH42449	Soybean	cytosol	88.46	88.46
GSMUA_Achr1P17510_001	Banana	cytosol	87.69	87.69
GSMUA_Achr1P15220_001	Banana	cytosol	87.69	87.69
CDY22067	Canola	cytosol	83.08	84.38
CDY21901	Canola	cytosol	83.08	84.38
CDX90929	Canola	cytosol	83.08	84.38
Bra036253.1-P	Field mustard	cytosol	83.08	84.38
Bra000871.1-P	Field mustard	cytosol	83.08	84.38
CDY18010	Canola	cytosol	82.31	83.59
AT4G02620.1	Thale cress	cytosol	80.77	82.03
CDX91295	Canola	endoplasmic reticulum	82.31	75.89

Protein Annotations

MapMan:24.1.1.2.6	Gene3D:3.40.50.10580	EntrezGene:4331207	EntrezGene:4335014	InterPro:ATPase_V1-cplx_f_g_su	InterPro:ATPase_V1-cplx_fsu_euk
InterPro:ATPase_V1_fsu_sf	ProteinID:BAD22867.1	ProteinID:BAF10491.1	ProteinID:BAS81673.1	ProteinID:BAS87744.1	ProteinID:EAZ29589.1
ProteinID:EEE58078.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0006811	GO:GO:0008150	GO:GO:0015991	GO:GO:0016020	GO:GO:0016787	GO:GO:0033180
GO:GO:0034220	GO:GO:0042625	GO:GO:0046961	InterPro:IPR036906	EnsemblPlantsGene:Os02g0824700	EnsemblPlants:Os02t0824700-01
PFAM:PF01990	PIRSF:PIRSF015945	PANTHER:PTHR13861	PANTHER:PTHR13861:SF6	UniProt:Q6KAA4	SUPFAM:SSF159468
TIGRFAMs:TIGR01101	UniParc:UPI00003B0479	RefSeq:XP_015623466.1	RefSeq:XP_015633904.1	RefSeq:XP_015633905.1	:

Description

Similar to Vacuolar ATP synthase subunit F (EC 3.6.3.14) (V-ATPase F subunit) (Vacuolar proton pump F subunit) (V-ATPase 14 kDa subunit). (Os02t0824700-01)

Coordinates

chr2:+:35427553..35430580

Molecular Weight (calculated)

14442.3 Da

IEP (calculated)

5.740

GRAVY (calculated)

-0.070

Length

130 amino acids

Sequence
(BLAST)

001: MAGRPSIPTN SSALIAIIAD EDTVTGFLLA GVGNVDLRKK TNYLIVDNKT TVKQIEDAFK EFTTREDIAI VLISQYVANM IRFLVDSYNR PVPAILEIPS
101: KDHPYDPAHD SVLSRVKYLF SAESVASDRR

Best Arabidopsis Sequence Match ( AT4G02620.1 )
(BLAST)

001: MAGRATIPAR NSALIAMIAD EDTVVGFLMA GVGNVDIRRK TNYLIVDSKT TVRQIEDAFK EFSARDDIAI ILLSQYIANM IRFLVDSYNK PVPAILEIPS
101: KDHPYDPAHD SVLSRVKYLF SAESVSQR

Arabidopsis Description

VHA-FV-type proton ATPase subunit F [Source:UniProtKB/TrEMBL;Acc:A0A178V4M8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.