Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
23462973
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER90124 | Sorghum | nucleus | 70.33 | 69.3 |
| EER88729 | Sorghum | nucleus | 69.73 | 67.53 |
| Zm00001d036726_P001 | Maize | nucleus | 67.66 | 66.28 |
| TraesCS7B01G418500.2 | Wheat | nucleus | 63.8 | 65.35 |
| Zm00001d046805_P001 | Maize | nucleus | 67.95 | 65.24 |
| TraesCS7D01G497800.1 | Wheat | nucleus | 62.02 | 64.11 |
| TraesCS7D01G497400.1 | Wheat | nucleus | 62.02 | 63.91 |
| TraesCS7A01G508800.1 | Wheat | nucleus | 61.42 | 63.3 |
| TraesCS7B01G419400.1 | Wheat | nucleus | 59.35 | 62.11 |
| TraesCS7B01G418400.1 | Wheat | nucleus | 59.64 | 61.66 |
| HORVU7Hr1G113830.1 | Barley | nucleus | 58.16 | 61.44 |
| TraesCS7A01G508700.1 | Wheat | nucleus | 59.05 | 61.42 |
| TraesCS7D01G497700.1 | Wheat | nucleus | 59.05 | 60.67 |
| Os02t0181300-01 | Rice | nucleus | 62.02 | 60.06 |
| TraesCS7A01G509000.1 | Wheat | nucleus | 59.64 | 57.76 |
| TraesCS7B01G418600.1 | Wheat | nucleus | 48.66 | 56.75 |
| HORVU7Hr1G113850.4 | Barley | nucleus, plastid | 63.5 | 52.71 |
| TraesCS7D01G497300.1 | Wheat | plastid | 58.16 | 52.69 |
| GSMUA_Achr7P05200_001 | Banana | nucleus | 41.84 | 50.36 |
| PGSC0003DMT400073710 | Potato | nucleus | 28.49 | 44.24 |
| Solyc12g042590.1.1 | Tomato | nucleus | 28.19 | 43.98 |
| Bra019123.1-P | Field mustard | nucleus | 24.93 | 43.3 |
| Solyc08g067340.2.1 | Tomato | nucleus | 31.75 | 42.29 |
| KRH61669 | Soybean | nucleus | 27.6 | 42.27 |
| PGSC0003DMT400019061 | Potato | nucleus | 30.86 | 41.11 |
| CDY22299 | Canola | nucleus | 35.31 | 41.03 |
| CDY67287 | Canola | nucleus | 35.31 | 41.03 |
| Bra008435.1-P | Field mustard | nucleus | 35.31 | 41.03 |
| PGSC0003DMT400019058 | Potato | nucleus | 31.75 | 41.0 |
| CDX75196 | Canola | nucleus | 34.42 | 40.99 |
| KRH15674 | Soybean | nucleus | 34.12 | 40.78 |
| KRH23643 | Soybean | nucleus | 37.39 | 40.78 |
| Solyc08g067360.2.1 | Tomato | nucleus | 31.16 | 40.7 |
| KRH47344 | Soybean | nucleus | 37.09 | 40.19 |
| VIT_09s0018g00240.t01 | Wine grape | nucleus | 36.5 | 39.55 |
| AT2G25000.1 | Thale cress | nucleus | 31.75 | 39.48 |
| CDX87347 | Canola | nucleus | 35.01 | 39.33 |
| Bra035148.1-P | Field mustard | nucleus | 35.01 | 39.33 |
| CDX72327 | Canola | nucleus | 33.23 | 39.3 |
| CDX88573 | Canola | nucleus | 35.01 | 39.2 |
| Bra003588.1-P | Field mustard | nucleus | 34.42 | 39.06 |
| CDX67971 | Canola | nucleus | 34.42 | 39.06 |
| KRH44560 | Soybean | nucleus | 36.2 | 38.98 |
| CDX79347 | Canola | nucleus | 34.42 | 38.93 |
| AT1G80840.1 | Thale cress | nucleus | 34.72 | 38.74 |
| Bra010220.1-P | Field mustard | nucleus | 34.42 | 37.66 |
| VIT_04s0008g05760.t01 | Wine grape | nucleus | 35.31 | 37.54 |
| CDY39879 | Canola | nucleus | 34.12 | 37.46 |
| KRH09652 | Soybean | nucleus | 36.5 | 37.27 |
| AT4G31800.1 | Thale cress | nucleus | 34.12 | 37.1 |
| CDX68787 | Canola | nucleus | 35.01 | 36.99 |
| Bra011299.1-P | Field mustard | nucleus | 34.72 | 36.91 |
| KRH05350 | Soybean | nucleus | 33.53 | 36.22 |
| Os09t0417600-02 | Rice | nucleus | 34.42 | 35.47 |
| Solyc03g116890.2.1 | Tomato | nucleus | 34.72 | 33.43 |
| Solyc06g068460.2.1 | Tomato | nucleus | 35.61 | 33.33 |
| PGSC0003DMT400073396 | Potato | nucleus | 35.61 | 33.33 |
| KRH52329 | Soybean | nucleus | 29.97 | 32.69 |
| PGSC0003DMT400051047 | Potato | nucleus | 34.42 | 32.68 |
| Os09t0417800-01 | Rice | nucleus | 30.56 | 32.39 |
| CDY70096 | Canola | nucleus | 32.34 | 31.59 |
| Bra023983.1-P | Field mustard | nucleus | 32.34 | 31.59 |
| Os01t0586800-00 | Rice | nucleus | 16.02 | 27.84 |
| Os05t0137500-00 | Rice | nucleus | 23.74 | 16.88 |
| Os01t0289600-00 | Rice | nucleus, plastid | 19.29 | 15.82 |
| Os01t0185900-01 | Rice | nucleus | 22.26 | 14.79 |
| Os06t0146250-00 | Rice | nucleus | 23.74 | 13.24 |
| Os02t0770500-00 | Rice | nucleus | 24.63 | 12.79 |
| Os05t0567200-00 | Rice | nucleus | 19.58 | 11.24 |
| Os01t0246700-01 | Rice | nucleus | 10.98 | 8.96 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006950 | GO:GO:0006952 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009620 | GO:GO:0009719 |
| GO:GO:0009987 | GO:GO:0010200 | GO:GO:0043565 | GO:GO:0045892 | GO:GO:1905034 | InterPro:IPR003657 |
| InterPro:IPR036576 | EnsemblPlantsGene:Os06g0649000 | EnsemblPlants:Os06t0649000-01 | PFAM:PF03106 | PFscan:PS50811 | PANTHER:PTHR31429 |
| PANTHER:PTHR31429:SF33 | SMART:SM00774 | SUPFAM:SSF118290 | UniParc:UPI000042625A | InterPro:WRKY_dom | InterPro:WRKY_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
WRKY GENE 28PAMP (pathogen-associated molecular pattern)-responsive transrepressor, Defense response (Os06t0649000-01)
Coordinates
chr6:-:26510006..26511606
Molecular Weight (calculated)
36036.3 Da
IEP (calculated)
9.358
GRAVY (calculated)
-0.497
Length
337 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSWIEQTSL SLDLNVGLPS TARRSSAPAA PIKVLVEENF LSFKKDHEVE ALEAELRRAS EENKKLTEML RAVVAKYTEL QGQVNDMMSA AAAAAVNAGN
101: HQSSTSEGGS VSPSRKRIRS VDSLDDAAHH RKPSPPFVAA AAAAAYASPD QMECTSAAAA AAAKRVVRED CKPKVSKRFV HADPSDLSLV VKDGYQWRKY
201: GQKVTKDNPC PRAYFRCSFA PACPVKKKVQ RSADDNTVLV ATYEGEHNHA QPPHHDAGSK TAAAAKHSQH QPPPSAAAAV VRQQQEQAAA AGPSTEVAAR
301: KNLAEQMAAT LTRDPGFKAA LVTALSGRIL ELSPTKN
101: HQSSTSEGGS VSPSRKRIRS VDSLDDAAHH RKPSPPFVAA AAAAAYASPD QMECTSAAAA AAAKRVVRED CKPKVSKRFV HADPSDLSLV VKDGYQWRKY
201: GQKVTKDNPC PRAYFRCSFA PACPVKKKVQ RSADDNTVLV ATYEGEHNHA QPPHHDAGSK TAAAAKHSQH QPPPSAAAAV VRQQQEQAAA AGPSTEVAAR
301: KNLAEQMAAT LTRDPGFKAA LVTALSGRIL ELSPTKN
001: MDYDPNTNPF DLHFSGKLPK REVSASASKV VEKKWLVKDE KRNMLQDEIN RVNSENKKLT EMLARVCEKY YALNNLMEEL QSRKSPESVN FQNKQLTGKR
101: KQELDEFVSS PIGLSLGPIE NITNDKATVS TAYFAAEKSD TSLTVKDGYQ WRKYGQKITR DNPSPRAYFR CSFSPSCLVK KKVQRSAEDP SFLVATYEGT
201: HNHTGPHASV SRTVKLDLVQ GGLEPVEEKK ERGTIQEVLV QQMASSLTKD PKFTAALATA ISGRLIEHSR T
101: KQELDEFVSS PIGLSLGPIE NITNDKATVS TAYFAAEKSD TSLTVKDGYQ WRKYGQKITR DNPSPRAYFR CSFSPSCLVK KKVQRSAEDP SFLVATYEGT
201: HNHTGPHASV SRTVKLDLVQ GGLEPVEEKK ERGTIQEVLV QQMASSLTKD PKFTAALATA ISGRLIEHSR T
Arabidopsis Description
WRKY60Probable WRKY transcription factor 60 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK33]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.