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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus, plastid
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra003588.1-P
Bra008435.1-P
Bra010220.1-P
Bra011299.1-P
Bra019123.1-P
Bra023983.1-P
Bra035148.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G31800.1 Bra003588.1-P AT1G80840.1 16603654
AT4G31800.1 Bra008435.1-P AT1G80840.1 16603654
AT4G31800.1 Bra035148.1-P AT1G80840.1 16603654
AT4G31800.1 Bra003588.1-P AT1G80840.1 18776063
AT4G31800.1 Bra008435.1-P AT1G80840.1 18776063
AT4G31800.1 Bra035148.1-P AT1G80840.1 18776063
AT4G31800.1 Bra003588.1-P AT1G80840.1 21798944
AT4G31800.1 Bra008435.1-P AT1G80840.1 21798944
AT4G31800.1 Bra035148.1-P AT1G80840.1 21798944
AT4G31800.1 Bra010220.1-P AT2G25000.1 16603654
AT4G31800.1 Bra011299.1-P AT4G31800.1 16603654
AT4G31800.1 Bra019123.1-P AT4G31800.1 16603654
AT4G31800.1 Bra023983.1-P AT4G31800.1 16603654
AT4G31800.1 Bra011299.1-P AT4G31800.1 21798944
AT4G31800.1 Bra019123.1-P AT4G31800.1 21798944
AT4G31800.1 Bra023983.1-P AT4G31800.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX68787 Canola nucleus 95.9 95.3
AT4G31800.1 Thale cress nucleus 80.13 81.94
Bra010220.1-P Field mustard nucleus 79.5 81.82
Bra019123.1-P Field mustard nucleus 47.63 77.84
Bra023983.1-P Field mustard nucleus 75.39 69.28
GSMUA_Achr7P19340_001 Banana nucleus 31.86 52.6
PGSC0003DMT400019058 Potato nucleus 39.12 47.51
KRH61669 Soybean nucleus 32.49 46.82
Solyc08g067340.2.1 Tomato nucleus 37.22 46.64
GSMUA_Achr5P16460_001 Banana nucleus 34.38 46.38
GSMUA_Achr2P05100_001 Banana nucleus 27.76 46.32
PGSC0003DMT400019061 Potato nucleus 36.91 46.25
GSMUA_Achr10P... Banana nucleus 33.75 46.12
Solyc08g067360.2.1 Tomato nucleus 37.22 45.74
KRH15674 Soybean nucleus 39.43 44.33
VIT_04s0008g05760.t01 Wine grape nucleus 43.53 43.53
GSMUA_Achr3P13440_001 Banana nucleus 37.54 43.27
GSMUA_Achr7P05200_001 Banana nucleus 37.85 42.86
GSMUA_Achr11P... Banana nucleus 32.81 42.45
Bra008435.1-P Field mustard nucleus 38.8 42.41
Bra003588.1-P Field mustard nucleus 39.43 42.09
HORVU5Hr1G065380.2 Barley nucleus 22.71 41.38
Bra035148.1-P Field mustard nucleus 38.17 40.33
GSMUA_Achr10P... Banana nucleus 36.28 39.93
KRH05350 Soybean nucleus 38.49 39.1
GSMUA_Achr7P16090_001 Banana endoplasmic reticulum, nucleus, plastid 27.13 38.56
GSMUA_Achr4P01930_001 Banana extracellular, golgi 33.12 36.33
KRH52329 Soybean nucleus 35.02 35.92
Os02t0181300-01 Rice nucleus 39.12 35.63
Zm00001d053746_P001 Maize nucleus 35.96 35.51
TraesCS6A01G146900.1 Wheat nucleus 39.12 35.43
TraesCS6D01G136200.1 Wheat nucleus 38.8 35.34
TraesCS7D01G497400.1 Wheat nucleus 35.96 34.86
Os06t0649000-01 Rice nucleus 36.91 34.72
TraesCS7D01G497800.1 Wheat nucleus 35.65 34.66
TraesCS7B01G418500.2 Wheat nucleus 35.96 34.65
HORVU6Hr1G028790.1 Barley nucleus 38.17 34.28
TraesCS7A01G508700.1 Wheat nucleus 35.02 34.26
HORVU7Hr1G113830.1 Barley nucleus 34.38 34.17
TraesCS7B01G418400.1 Wheat nucleus 35.02 34.05
Zm00001d015515_P001 Maize nucleus 37.22 34.01
TraesCS7A01G508800.1 Wheat nucleus 35.02 33.95
TraesCS7B01G419400.1 Wheat nucleus 34.38 33.85
TraesCS7D01G497700.1 Wheat nucleus 35.02 33.84
GSMUA_Achr1P10080_001 Banana nucleus 35.65 33.73
TraesCS6B01G175100.2 Wheat nucleus 37.54 33.52
EES04642 Sorghum nucleus 38.49 33.52
TraesCS5D01G232700.1 Wheat nucleus 28.39 33.21
EER90124 Sorghum nucleus 35.65 33.04
TraesCS5B01G224000.1 Wheat nucleus 34.38 32.93
Zm00001d020492_P001 Maize nucleus 31.23 32.78
Zm00001d046805_P001 Maize nucleus 36.28 32.76
TraesCS5D01G232800.1 Wheat nucleus 34.07 32.63
TraesCS7B01G418600.1 Wheat nucleus 29.65 32.53
TraesCS5A01G225500.1 Wheat nucleus 27.76 32.47
EER88729 Sorghum nucleus 35.33 32.18
TraesCS5A01G225600.1 Wheat nucleus 33.44 32.02
Zm00001d020495_P001 Maize nucleus 26.81 31.95
Zm00001d036726_P001 Maize nucleus 34.38 31.69
TraesCS7A01G509000.1 Wheat nucleus 34.38 31.32
Os09t0417600-02 Rice nucleus 32.18 31.19
TraesCS5B01G224100.1 Wheat nucleus 32.18 30.91
EER98905 Sorghum nucleus, plastid 31.86 30.89
KXG35639 Sorghum nucleus 28.71 30.85
TraesCS7D01G497300.1 Wheat plastid 35.33 30.11
Os09t0417800-01 Rice nucleus 28.71 28.62
TraesCS5D01G232900.1 Wheat nucleus 33.12 28.3
HORVU7Hr1G113850.4 Barley nucleus, plastid 35.65 27.83
Zm00001d005749_P001 Maize nucleus 29.34 26.5
HORVU5Hr1G065420.15 Barley nucleus 32.49 26.34
Bra025693.1-P Field mustard nucleus 17.98 19.86
Bra004285.1-P Field mustard nucleus 18.93 18.29
Bra029491.1-P Field mustard nucleus 27.76 17.89
Bra027057.1-P Field mustard nucleus 29.97 17.21
Bra036315.1-P Field mustard nucleus 26.18 16.94
Bra007884.1-P Field mustard nucleus 20.19 16.71
Bra013584.1-P Field mustard nucleus 27.44 16.17
Bra000793.1-P Field mustard nucleus 26.18 15.99
Bra031053.1-P Field mustard nucleus 23.34 15.74
Bra016535.1-P Field mustard nucleus 23.34 15.61
Bra034482.1-P Field mustard nucleus 24.92 15.58
Bra006283.1-P Field mustard nucleus 25.87 15.56
Bra023505.1-P Field mustard nucleus 25.24 15.5
Bra008719.1-P Field mustard nucleus 25.55 14.7
Bra040505.1-P Field mustard nucleus 24.29 14.39
Bra016263.1-P Field mustard nucleus 19.24 8.16
Bra025692.1-P Field mustard nucleus 5.05 6.64
Protein Annotations
MapMan:15.5.22Gene3D:2.20.25.80EnsemblPlantsGene:Bra011299EnsemblPlants:Bra011299.1EnsemblPlants:Bra011299.1-Pncoils:Coil
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0043565InterPro:IPR003657
InterPro:IPR036576UniProt:M4D495PFAM:PF03106PFscan:PS50811PANTHER:PTHR31429PANTHER:PTHR31429:SF32
SMART:SM00774SUPFAM:SSF118290UniParc:UPI00025467FEInterPro:WRKY_domInterPro:WRKY_dom_sfSEG:seg
Description
AT4G31800 (E=2e-122) WRKY18, ATWRKY18 | WRKY18; transcription factor
Coordinates
chrA01:-:2868582..2869908
Molecular Weight (calculated)
35707.6 Da
IEP (calculated)
8.321
GRAVY (calculated)
-0.888
Length
317 amino acids
Sequence
(BLAST)
001: MDCSSFLDIS LNLNTNSLDR SFPEKLPKKE VKVSTSADLK RKWMVKDESA SELREELNRV NSENKKLTET LATVYENYYA LQHHLEKLQS RRQSPETDQL
101: EQPLKRRKQD SDESLSLPNG LSSGINENSS SNEAHHHHHQ QQQQYEQKNQ LISCKRSVTD SFNKAQVSTV YVPAVSSDTS LTVKDGYQWR KYGQKVTRDN
201: PSPRAYFRCS FAPSCPVKKK VQRSAEDPSI LVATYEGTHN HLGPNASEGD ATSQVGSRTM TLDMVHGGHS LALEKNERET MQEVLVQQMA SSLTKDSKFT
301: AALAAAISGR LMEQSRT
Best Arabidopsis Sequence Match ( AT4G31800.1 )
(BLAST)
001: MDGSSFLDIS LDLNTNPFSA KLPKKEVSVL ASTHLKRKWL EQDESASELR EELNRVNSEN KKLTEMLARV CESYNELHNH LEKLQSRQSP EIEQTDIPIK
101: KRKQDPDEFL GFPIGLSSGK TENSSSNEDH HHHHQQHEQK NQLLSCKRPV TDSFNKAKVS TVYVPTETSD TSLTVKDGFQ WRKYGQKVTR DNPSPRAYFR
201: CSFAPSCPVK KKVQRSAEDP SLLVATYEGT HNHLGPNASE GDATSQGGSS TVTLDLVNGC HRLALEKNER DNTMQEVLIQ QMASSLTKDS KFTAALAAAI
301: SGRLMEQSRT
Arabidopsis Description
WRKY18WRKY like transcription factor [Source:UniProtKB/TrEMBL;Acc:Q0WTZ3]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.